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Accession: PRJNA697844 ID: 697844

Clinical and Environmental Aspergillus fumigatus in Germany

Genome sequencing of environmental Aspergillus fumigatus isolates collected from farms in central Germany and clinical isolates submitted to the German National Reference Center for Invasive Fungal Disease.
AccessionPRJNA697844
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsBarber AE et al., "Aspergillus fumigatus pan-genome analysis identifies genetic variants associated with human infection.", Nat Microbiol, 2021 Dec;6(12):1526-1536
Grants
  • "InfectControl 2020: FINAR" (Grant ID 03ZZ0809, Bundesministerium für Bildung und Forschung)
  • "InfectControl 2020: FINAR2.0" (Grant ID 03ZZ0834, Bundesministerium für Bildung und Forschung)
SubmissionRegistration date: 29-Jan-2021
Leibniz-HKI
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)87539
WGS master188
SRA Experiments188
Protein Sequences1772375
Publications
PubMed1
Other datasets
BioSample188
Assembly188
Assembly details:
Assembly levelNumber of Assemblies
12
176
188
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_020503745.1ScaffoldJAIBYU000000000SAMN17673914
A-2-48s-2
GCA_020503895.1ContigJAIBZA000000000SAMN17673908
B-1-66L-1
GCA_020503885.1ContigJAIBYZ000000000SAMN17673909
B-1-73L-1
GCA_020503805.1ContigJAIBYW000000000SAMN17673912
D-2-44L-1
GCA_020503825.1ContigJAIBYY000000000SAMN17673910
A-2-26s-2
GCA_020503815.1ContigJAIBYV000000000SAMN17673913
D-2-43L-1
GCA_020503795.1ContigJAIBYX000000000SAMN17673911
A-2-27s-1
GCA_020503735.1ContigJAIBYT000000000SAMN17673915
A-2-47L-2
GCA_020503715.1ContigJAIBYR000000000SAMN17673917
K-1-3L-2
GCA_020503705.1ContigJAIBYQ000000000SAMN17673918
K-1-34L-1
GCA_020503725.1ContigJAIBYS000000000SAMN17673916
A-2-47s-3
GCA_020503645.1ContigJAIBYO000000000SAMN17673920
D-2-39L-2
GCA_020503635.1ContigJAIBYN000000000SAMN17673921
K-1-32s-1
GCA_020503665.1ContigJAIBYP000000000SAMN17673919
K-1-18L-3
GCA_020503565.1ContigJAIBYL000000000SAMN17673923
K-1-8L-1
GCA_020503595.1ScaffoldJAIBYM000000000SAMN17673922
K-1-1L-5
GCA_020503545.1ContigJAIBYK000000000SAMN17673924
K-1-3L-4
GCA_020503535.1ContigJAIBYI000000000SAMN17673926
K-1-4s-1
GCA_020503555.1ContigJAIBYJ000000000SAMN17673925
K-1-18L-6
GCA_020503515.1ContigJAIBYH000000000SAMN17673927
L-2-16-1
GCA_020503465.1ContigJAIBYG000000000SAMN17673928
L-2-17-1
GCA_020503295.1ContigJAIBXX000000000SAMN17673937
L-2-11-4
GCA_020503455.1ContigJAIBYD000000000SAMN17673931
L-2-9-1
GCA_020503445.1ContigJAIBYF000000000SAMN17673929
L-2-7-2
GCA_020503435.1ContigJAIBYE000000000SAMN17673930
L-2-7-1
GCA_020503395.1ContigJAIBYC000000000SAMN17673932
L-2-9-5
GCA_020503345.1ContigJAIBXZ000000000SAMN17673935
L-2-22-4
GCA_020503375.1ContigJAIBYB000000000SAMN17673933
L-2-15-4
GCA_020503365.1ContigJAIBYA000000000SAMN17673934
L-2-16-3
GCA_020503305.1ContigJAIBXY000000000SAMN17673936
L-2-11-2
GCA_020503265.1ContigJAIBXV000000000SAMN17673939
K-1-24L-1
GCA_020503275.1ContigJAIBXW000000000SAMN17673938
F-1-10L-1
GCA_020503245.1ContigJAIBXU000000000SAMN17673940
K-1-4s-1_2
GCA_020503195.1ContigJAIBXT000000000SAMN17673941
K-1-12L-1
GCA_020503185.1ContigJAIBXR000000000SAMN17673943
F-1-13L-1
GCA_020503935.1ContigJAIBZD000000000SAMN17673905
D-2-32L-1
GCA_020503915.1ContigJAIBZC000000000SAMN17673906
C-1-76s-2
GCA_020503905.1ScaffoldJAIBZB000000000SAMN17673907
B-1-78L-1
GCA_020503175.1ContigJAIBXP000000000SAMN17673945
C-1-93s-1
GCA_020503205.1ContigJAIBXS000000000SAMN17673942
F-1-4L-1
GCA_020503105.1ContigJAIBXO000000000SAMN17673946
F-1-13L-3
GCA_020503165.1ContigJAIBXQ000000000SAMN17673944
F-1-33L-2
GCA_020503085.1ContigJAIBXM000000000SAMN17673948
I-1-25-1
GCA_020503065.1ContigJAIBXL000000000SAMN17673949
D-2-26s-1
GCA_020503095.1ContigJAIBXN000000000SAMN17673947
F-1-3L-1
GCA_020503055.1ContigJAIBXK000000000SAMN17673950
I-1-12-1
GCA_020503015.1ContigJAIBXJ000000000SAMN17673951
I-1-22-5
GCA_020502985.1ContigJAIBXH000000000SAMN17673953
I-1-32-2
GCA_020502995.1ContigJAIBXI000000000SAMN17673952
I-1-22-4
GCA_020502725.1ContigJAIBXF000000000SAMN17673955
I-1-19-2
GCA_020502875.1ContigJAIBXG000000000SAMN17673954
I-1-32-1
GCA_020502715.1ContigJAIBXE000000000SAMN17673956
I-1-2-4
GCA_020502675.1ContigJAIBXB000000000SAMN17673959
B-1-32-3
GCA_020502705.1ContigJAIBXD000000000SAMN17673957
I-1-2-2
GCA_020502695.1ContigJAIBXC000000000SAMN17673958
D-2-15L-3
GCA_020502615.1ContigJAIBWZ000000000SAMN17673961
B-1-30-1
GCA_020502605.1ContigJAIBWY000000000SAMN17673962
C-1-31s-1
GCA_020502625.1ContigJAIBXA000000000SAMN17673960
H-1-15-2
GCA_020502575.1ContigJAIBWW000000000SAMN17673964
C-1-28L-1
GCA_020502595.1ContigJAIBWX000000000SAMN17673963
C-1-30L-1
GCA_020502385.1ContigJAIBWO000000000SAMN17673972
L-2-24-1
GCA_020502545.1ContigJAIBWV000000000SAMN17673965
E-1-46-2
GCA_020502485.1ContigJAIBWS000000000SAMN17673968
C-1-33L-2
GCA_020502525.1ContigJAIBWU000000000SAMN17673966
E-1-37L-2
GCA_020502495.1ContigJAIBWT000000000SAMN17673967
C-1-40L-2
GCA_020502455.1ContigJAIBWR000000000SAMN17673969
A-2-35s-1
GCA_020502365.1ContigJAIBWM000000000SAMN17673974
L-2-21-2
GCA_020502425.1ContigJAIBWP000000000SAMN17673971
A-3-43s-1
GCA_020502375.1ContigJAIBWN000000000SAMN17673973
L-2-4-3
GCA_020502335.1ContigJAIBWL000000000SAMN17673975
A-3-46s-1
GCA_020502325.1ContigJAIBWK000000000SAMN17673976
A-3-45L-2
GCA_020502245.1ContigJAIBWI000000000SAMN17673978
H-1-21-5
GCA_020502235.1ContigJAIBWJ000000000SAMN17673977
A-3-40L-1
GCA_020502215.1ContigJAIBWG000000000SAMN17673980
H-1-21-9
GCA_020502435.1ContigJAIBWQ000000000SAMN17673970
A-2-36s-3
GCA_020502225.1ContigJAIBWH000000000SAMN17673979
H-1-30-2
GCA_020502165.1ContigJAIBWE000000000SAMN17673982
E-1-20-2
GCA_020502125.1ContigJAIBWD000000000SAMN17673983
H-1-29-2
GCA_020502115.1ContigJAIBWC000000000SAMN17673984
C-1-64L-2
GCA_020502095.1ContigJAIBWA000000000SAMN17673986
K-1-48s-1
GCA_020502105.1ContigJAIBWB000000000SAMN17673985
K-1-1L-2
GCA_020502035.1ContigJAIBVY000000000SAMN17673988
C-1-66L-2
GCA_020502005.1ContigJAIBVW000000000SAMN17673990
C-1-66L-3
GCA_020502045.1ScaffoldJAIBVZ000000000SAMN17673987
K-1-8L-3
GCA_020502025.1ContigJAIBVX000000000SAMN17673989
H-1-1-2
GCA_020501835.1ContigJAIBVN000000000SAMN17673999
C-1-90L-1
GCA_020501985.1ContigJAIBVU000000000SAMN17673992
H-1-23-3
GCA_020501905.1ContigJAIBVS000000000SAMN17673994
I-1-49-3
GCA_020501895.1ContigJAIBVQ000000000SAMN17673996
C-1-24L-3
GCA_020501935.1ContigJAIBVT000000000SAMN17673993
I-1-48-3
GCA_020501885.1ContigJAIBVR000000000SAMN17673995
F-1-14-1
GCA_020501875.1ContigJAIBVP000000000SAMN17673997
H-1-26-1
GCA_020501785.1ContigJAIBVL000000000SAMN17674001
G-2-1-2
GCA_020501815.1ContigJAIBVO000000000SAMN17673998
G-2-22-4
GCA_020501805.1ContigJAIBVM000000000SAMN17674000
G-2-6-1
GCA_020501765.1ContigJAIBVK000000000SAMN17674002
G-2-14-1
GCA_020501735.1ScaffoldJAIBVJ000000000SAMN17674003
G-2-5-2
GCA_020501715.1ContigJAIBVH000000000SAMN17674005
G-2-9-2
GCA_020501705.1ContigJAIBVI000000000SAMN17674004
G-2-3-1
GCA_020501645.1ContigJAIBVF000000000SAMN17674007
L-3-21-3
GCA_020501695.1ScaffoldJAIBVG000000000SAMN17674006
L-3-21-1
GCA_020501575.1ContigJAIBVB000000000SAMN17674011
L-3-13-2
GCA_020501615.1ContigJAIBVD000000000SAMN17674009
L-3-11-1
GCA_020501635.1ContigJAIBVE000000000SAMN17674008
L-3-15-2
GCA_020501605.1ContigJAIBVC000000000SAMN17674010
L-3-13-1
GCA_020501555.1ContigJAIBVA000000000SAMN17674012
L-3-24-1
GCA_020501545.1ContigJAIBUZ000000000SAMN17674013
L-3-7-1
GCA_020501535.1ContigJAIBUY000000000SAMN17674014
L-3-22-2
GCA_020501465.1ContigJAIBUV000000000SAMN17674017
A-2-49L-2
GCA_020501355.1ContigJAIBUQ000000000SAMN17674022
C-1-94L-2
GCA_020501475.1ContigJAIBUX000000000SAMN17674015
L-3-24-3
GCA_020501495.1ContigJAIBUW000000000SAMN17674016
L-3-11-2
GCA_020501445.1ContigJAIBUU000000000SAMN17674018
C-1-49-1
GCA_020501425.1ContigJAIBUT000000000SAMN17674019
E-1-66s-1
GCA_020501325.1ContigJAIBUL000000000SAMN17674027
C-1-69s-1
GCA_020501405.1ContigJAIBUS000000000SAMN17674020
A-2-49L-5
GCA_020501375.1ContigJAIBUR000000000SAMN17674021
C-1-67s-1
GCA_020501345.1ContigJAIBUP000000000SAMN17674023
A-3-37s-1
GCA_020501335.1ContigJAIBUN000000000SAMN17674025
A-3-30s-2
GCA_020501175.1ContigJAIBUH000000000SAMN17674031
F-1-42-2
GCA_020501235.1ContigJAIBUJ000000000SAMN17674029
A-2-34L-2
GCA_020501255.1ContigJAIBUO000000000SAMN17674024
E-1-67s-1
GCA_020501265.1ContigJAIBUM000000000SAMN17674026
C-1-99L-2
GCA_020501245.1ContigJAIBUK000000000SAMN17674028
C-1-34s-1
GCA_020502185.1ContigJAIBWF000000000SAMN17673981
L-2-13-4
GCA_020501995.1ScaffoldJAIBVV000000000SAMN17673991
H-1-10-6
GCA_020501115.1ContigJAIBUD000000000SAMN17674035
F-1-39-1
GCA_020501185.1ScaffoldJAIBUI000000000SAMN17674030
D-2-47L-2
GCA_020500905.1ContigJAIBTT000000000SAMN17674045
NRZ-2017-040
GCA_020500545.1ContigJAIBTC000000000SAMN17674062
NRZ-2017-534
GCA_020500815.1ContigJAIBTP000000000SAMN17674049
NRZ-2017-115
GCA_020500845.1ContigJAIBTQ000000000SAMN17674048
NRZ-2017-096
GCA_020500805.1ContigJAIBTO000000000SAMN17674050
NRZ-2017-134
GCA_020500785.1ContigJAIBTN000000000SAMN17674051
NRZ-2017-195
GCA_020500605.1ContigJAIBTG000000000SAMN17674058
NRZ-2017-362
GCA_020500775.1ContigJAIBTM000000000SAMN17674052
NRZ-2017-214
GCA_020500765.1ContigJAIBTA000000000SAMN17674064
NRZ-2015-218
GCA_020500695.1ContigJAIBTK000000000SAMN17674054
NRZ-2017-282
GCA_020500705.1ContigJAIBTL000000000SAMN17674053
NRZ-2014-065
GCA_020500685.1ContigJAIBTJ000000000SAMN17674055
NRZ-2017-283
GCA_020500535.1ContigJAIBTB000000000SAMN17674063
NRZ-2017-537
GCA_020500655.1ScaffoldJAIBTI000000000SAMN17674056
NRZ-2017-322
GCA_020500645.1ScaffoldJAIBTH000000000SAMN17674057
NRZ-2017-346
GCA_020500565.1ContigJAIBTE000000000SAMN17674060
NRZ-2017-434
GCA_020500595.1ContigJAIBTF000000000SAMN17674059
NRZ-2017-381
GCA_020500555.1ContigJAIBTD000000000SAMN17674061
NRZ-2017-508
GCA_020500485.1ContigJAIBSZ000000000SAMN17674065
NRZ-2017-546
GCA_020500445.1ContigJAIBSV000000000SAMN17674069
NRZ-2018-123
GCA_020500475.1ContigJAIBSX000000000SAMN17674067
NRZ-2018-097
GCA_020500235.1ContigJAIBSM000000000SAMN17674078
NRZ-2018-307
GCA_020500455.1ScaffoldJAIBSW000000000SAMN17674068
NRZ-2017-101
GCA_020500465.1ContigJAIBSY000000000SAMN17674066
NRZ-2018-043
GCA_020500395.1ContigJAIBSU000000000SAMN17674070
NRZ-2018-146
GCA_020500355.1ContigJAIBSS000000000SAMN17674072
NRZ-2018-272
GCA_020500365.1ContigJAIBSR000000000SAMN17674073
NRZ-2018-281
GCA_020500385.1ContigJAIBST000000000SAMN17674071
NRZ-2018-236
GCA_020500295.1ContigJAIBSN000000000SAMN17674077
NRZ-2018-300
GCA_020500305.1ContigJAIBSQ000000000SAMN17674074
NRZ-2018-286
GCA_020500275.1ContigJAIBSO000000000SAMN17674076
NRZ-2018-290
GCA_020500285.1ContigJAIBSP000000000SAMN17674075
NRZ-2016-032
GCA_020500205.1ContigJAIBSJ000000000SAMN17674081
NRZ-2018-326
GCA_020500215.1ContigJAIBSK000000000SAMN17674080
NRZ-2017-339
GCA_020500185.1ContigJAIBSL000000000SAMN17674079
NRZ-2018-313
GCA_020499865.1ContigJAIBSI000000000SAMN17674082
NRZ-2018-396
GCA_020499785.1ContigJAIBSE000000000SAMN17674086
NRZ-2016-063
GCA_020499775.1ContigJAIBSD000000000SAMN17674087
NRZ-2018-649
GCA_020499825.1ContigJAIBSH000000000SAMN17674083
NRZ-2018-529
GCA_020499815.1ContigJAIBSG000000000SAMN17674084
NRZ-2018-539
GCA_020499805.1ContigJAIBSF000000000SAMN17674085
NRZ-2018-646
GCA_020499755.1ContigJAIBSC000000000SAMN17674088
NRZ-2016-071
GCA_020499715.1ContigJAIBSB000000000SAMN17674089
NRZ-2016-108
GCA_020499685.1ContigJAIBSA000000000SAMN17674090
NRZ-2016-121
GCA_020499695.1ContigJAIBRY000000000SAMN17674092
NRZ-2016-342
GCA_020499675.1ScaffoldJAIBRZ000000000SAMN17674091
NRZ-2016-141
GCA_020501095.1ContigJAIBUC000000000SAMN17674036
A-2-45L-5
GCA_020501105.1ContigJAIBUE000000000SAMN17674034
D-2-49L-2
GCA_020501075.1ContigJAIBUB000000000SAMN17674037
D-2-50s-1
GCA_020501045.1ContigJAIBUA000000000SAMN17674038
D-2-43s-1
GCA_020500995.1ContigJAIBTY000000000SAMN17674040
A-2-43L-2
GCA_020500945.1ContigJAIBTV000000000SAMN17674043
D-2-15L-2
GCA_020501005.1ContigJAIBTZ000000000SAMN17674039
D-2-48L-1
GCA_020500975.1ContigJAIBTX000000000SAMN17674041
B-1-46-5
GCA_020500965.1ContigJAIBTW000000000SAMN17674042
C-1-77s-2
GCA_020500935.1ContigJAIBTU000000000SAMN17674044
NRZ-2017-039
GCA_020500875.1ContigJAIBTR000000000SAMN17674047
NRZ-2017-076
GCA_020500865.1ContigJAIBTS000000000SAMN17674046
NRZ-2017-069
GCA_020501145.1ContigJAIBUG000000000SAMN17674032
A-2-35L-1
GCA_020501135.1ContigJAIBUF000000000SAMN17674033
A-2-44L-2
SRA Data Details
ParameterValue
Data volume, Gbases306
Data volume, Tbytes0.12

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