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Accession: PRJNA685966 ID: 685966

Staphylococcus pseudintermedius

Pathogenesis of canine pyoderma - Whole genome sequencing of Staphylococcus pseudintermedius

See Genome Information for Staphylococcus pseudintermedius
The majority of canine pyodermas are caused by Staphylococcus pseudintermedius, which is part of the normal skin microbiota of the dog. More...
AccessionPRJNA685966
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismStaphylococcus pseudintermedius[Taxonomy ID: 283734]
Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus intermedius group; Staphylococcus pseudintermedius
Grants
  • "FROM WHOLE GENOME SEQUENCING TO CLINICAL METAGENOMICS: INVESTIGATIONS ON THE PATHOGENESIS OF PYODERMA IN THE DOG" (Grant ID RTI2018-101991-B-I00, Ministerio de Ciencia e InnovaciĆ³n, Spain)
SubmissionRegistration date: 1-Jan-2021
Universitat Autonoma de Barcelona
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)147
WGS master42
Genomic DNA105
SRA Experiments128
Protein Sequences192891
Other datasets
BioSample128
Assembly128
Assembly details:
Assembly levelNumber of Assemblies
83
3
42
128
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_019998825.2Complete genomeSAMN21249943
HSP210
GCA_019998805.2Complete genomeSAMN21249944
HSP211
GCA_019998785.2Complete genomeSAMN21249950
HSP225
GCA_019998765.2Complete genomeSAMN21249945
HSP212
GCA_019998745.2Complete genomeSAMN21249948
HSP216
GCA_019998705.2Complete genomeSAMN21249934
HSP155
GCA_019998685.2Complete genomeSAMN21249949
HSP224
GCA_019998665.2Complete genomeSAMN21249939
HSP160
GCA_019998525.2Complete genomeSAMN21249946
HSP213
GCA_019998395.2Complete genomeSAMN21249938
HSP159
GCA_019998285.2Complete genomeSAMN21249976
HSP282
GCA_019998185.2Complete genomeSAMN21249947
HSP214
GCA_019998065.2Complete genomeSAMN21249936
HSP157
GCA_019998045.2Complete genomeSAMN21249969
HSP274
GCA_019998025.2Complete genomeSAMN21249970
HSP276
GCA_019998005.2Complete genomeSAMN21249941
HSP199
GCA_019997985.2Complete genomeSAMN21249937
HSP158
GCA_019997965.2Complete genomeSAMN21249977
HSP283
GCA_019997945.2Complete genomeSAMN21249971
HSP277
GCA_019997905.2Complete genomeSAMN21249929
HSP149
GCA_019997885.2Complete genomeSAMN21249957
HSP252
GCA_019997845.2Complete genomeSAMN21249967
HSP266
GCA_019997825.2Complete genomeSAMN21249963
HSP262
GCA_019997805.2Complete genomeSAMN21249955
HSP239
GCA_019997785.2Complete genomeSAMN21249962
HSP261
GCA_019997765.2Complete genomeSAMN21249958
HSP255
GCA_019997705.2Complete genomeSAMN21249965
HSP264
GCA_019997625.2Complete genomeSAMN21249968
HSP267
GCA_019997565.2Complete genomeSAMN21249935
HSP156
GCA_019997445.2Complete genomeSAMN21249942
HSP204
GCA_019997325.2Complete genomeSAMN21249940
HSP166
GCA_019997285.2Complete genomeSAMN21249954
HSP238
GCA_019997265.2Complete genomeSAMN21249933
HSP154
GCA_019997245.2Complete genomeSAMN21249961
HSP260
GCA_019997225.2Complete genomeSAMN21249972
HSP278
GCA_019997205.2Complete genomeSAMN21249959
HSP258
GCA_019997185.2Complete genomeSAMN21249930
HSP151
GCA_019997165.2Complete genomeSAMN21249951
HSP226
GCA_019997145.2Complete genomeSAMN21249931
HSP152
GCA_019997125.2Complete genomeSAMN21249932
HSP153
GCA_019997105.2Complete genomeSAMN21249928
HSP147
GCA_019997085.2Complete genomeSAMN21249966
HSP265
GCA_019997065.2Complete genomeSAMN21249964
HSP263
GCA_019997045.2Complete genomeSAMN21249974
HSP280
GCA_019997005.2Complete genomeSAMN21249960
HSP259
GCA_019996945.2Complete genomeSAMN21249978
HSP284
GCA_019996845.2Complete genomeSAMN21249952
HSP227
GCA_019998365.3Complete genomeSAMN21249956
HSP240
GCA_019997925.3Complete genomeSAMN21249953
HSP228
GCA_020685925.2Complete genomeSAMN20568727
HSP232
GCA_020685685.2Complete genomeSAMN20568730
HSP237
GCA_020685705.2Complete genomeSAMN20568736
HSP246
GCA_020685885.2Complete genomeSAMN20568728
HSP235
GCA_020685905.2Complete genomeSAMN20568729
HSP236
GCA_020685745.2Complete genomeSAMN20568733
HSP243
GCA_020685805.2Complete genomeSAMN20568734
HSP244
GCA_016598915.1Complete genomeSAMN17102146
HSP080
GCA_016598895.1Complete genomeSAMN17102145
HSP079
GCA_016482585.1ContigJAENDA000000000
SAMN17102119
DG066
GCA_016482535.1ContigJAENCZ000000000
SAMN17102120
DG067
GCA_016482525.1ContigJAENCX000000000
SAMN17102123
DG076
GCA_016482445.1ContigJAENDE000000000
SAMN17102114
DG050
GCA_016482425.1ContigJAENCY000000000
SAMN17102121
DG071
GCA_016482405.1ContigJAENBY000000000
SAMN17102165
HSP142
GCA_016482365.1ContigJAENCA000000000
SAMN17102163
HSP140
GCA_016482345.1ContigJAENBV000000000
SAMN17102168
DHSP042
GCA_016482355.1ContigJAENBZ000000000
SAMN17102164
HSP141
GCA_016482325.1ContigJAENCE000000000
SAMN17102151
HSP095
GCA_016482305.1ContigJAENBU000000000
SAMN17102169
DHSP043
GCA_016482265.1ContigJAENBW000000000
SAMN17102167
DHSP041
GCA_016482245.1ContigJAENCD000000000
SAMN17102152
HSP096
GCA_016482235.1ContigJAENBX000000000
SAMN17102166
HSP143
GCA_016482225.1ContigJAENBT000000000
SAMN17102170
DHSP044
GCA_016482205.1ContigJAENCO000000000
SAMN17102135
DSP024
GCA_016482155.1ContigJAENCN000000000
SAMN17102136
DSP025
GCA_016482145.1ContigJAENDF000000000
SAMN17102113
DG040
GCA_016482125.1ContigJAENCM000000000
SAMN17102139
DSP028
GCA_016482135.1ContigJAENCI000000000
SAMN17102147
HSP081
GCA_016482105.1ContigJAENCJ000000000
SAMN17102144
DSP036
GCA_016482085.1ContigJAENDC000000000
SAMN17102116
DG062
GCA_016482035.1ContigJAENCL000000000
SAMN17102141
DSP032
GCA_016482045.1ContigJAENDB000000000
SAMN17102117
DG063
GCA_016482025.1ContigJAENBS000000000
SAMN17102171
DHSP045
GCA_016482005.1ContigJAENCU000000000
SAMN17102126
DG081
GCA_016481985.1ContigJAENCW000000000
SAMN17102124
DG077
GCA_016481935.1ContigJAENCV000000000
SAMN17102125
DG078
GCA_016481945.1ContigJAENCT000000000
SAMN17102127
DG082
GCA_016481925.1ContigJAENCS000000000
SAMN17102128
DG089
GCA_016481905.1ContigJAENCR000000000
SAMN17102129
DG093
GCA_016481865.1ContigJAENCP000000000
SAMN17102134
DSP022
GCA_016481845.1ContigJAENCK000000000
SAMN17102143
DSP035
GCA_016481855.1ContigJAENCQ000000000
SAMN17102130
DG094
GCA_016481825.1ContigJAENDD000000000
SAMN17102115
DG059
GCA_016481805.1ContigJAENCF000000000
SAMN17102150
HSP094
GCA_016481735.1ContigJAENCG000000000
SAMN17102149
HSP093
GCA_016481725.1ContigJAENCH000000000
SAMN17102148
HSP082
GCA_016481295.1ContigJAENBR000000000
SAMN17102172
DHSP046
GCA_016481265.1ContigJAENBQ000000000
SAMN17103452
DSP029
GCA_016481685.1ContigJAENCB000000000
SAMN17102156
HSP127
GCA_016481665.1ContigJAENCC000000000
SAMN17102153
HSP097
GCA_016455285.1Complete genomeSAMN17102138
DSP027
GCA_016455265.1Complete genomeSAMN17102140
DSP030
GCA_016455245.1Complete genomeSAMN17102155
HSP125
GCA_016455225.1Complete genomeSAMN17102133
DSP021
GCA_016455205.1Complete genomeSAMN17102118
DG064
GCA_016455185.1ChromosomeSAMN17102131
DG099
GCA_016455165.1Complete genomeSAMN17102122
DG072
GCA_016455145.1Complete genomeSAMN17102132
DSP020
GCA_016455125.1ChromosomeSAMN17102157
HSP132
GCA_016455105.1Complete genomeSAMN17102158
HSP134
GCA_016455085.1Complete genomeSAMN17102137
DSP026
GCA_016455065.1Complete genomeSAMN17102159
HSP135
GCA_016455045.1ChromosomeSAMN17102160
HSP136
GCA_016455025.1Complete genomeSAMN17102142
DSP034
GCA_016455005.1Complete genomeSAMN17102154
HSP118
GCA_016454985.1Complete genomeSAMN17102161
HSP137
GCA_016454965.1Complete genomeSAMN17102162
HSP138
GCA_020693985.1Complete genomeSAMN21249975
HSP281
GCA_020693965.1Complete genomeSAMN21249973
HSP279
GCA_020685785.2Complete genomeSAMN20568735
HSP245
GCA_020685625.2Complete genomeSAMN20568738
HSP250
GCA_020685725.2Complete genomeSAMN20568737
HSP249
GCA_020685865.2Complete genomeSAMN20568739
HSP251
GCA_020685765.2Complete genomeSAMN20568740
HSP253
GCA_020685605.2Complete genomeSAMN20568742
HSP285
GCA_020686685.2Complete genomeSAMN20568743
HSP286
GCA_020685845.2Complete genomeSAMN20568731
HSP241
GCA_020685645.2Complete genomeSAMN20568732
HSP242
SRA Data Details
ParameterValue
Data volume, Gbases68
Data volume, Mbytes60791

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