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Accession: PRJEB52344 ID: 858361

EJP CARE_Genomes from french Anses Collection

Phylogenetic analysis of the most widespread serovars of Salmonella enterica

Salmonella is the most common cause of gastroenteritis in the world and unsafe food is one of the main sources of infection. More...
AccessionPRJEB52344
Data TypeGenome sequencing and assembly
ScopeMonoisolate
SubmissionRegistration date: 13-Jul-2022
ANSES
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)1433
WGS master64
SRA Experiments73
Other datasets
BioSample73
Assembly64
Assembly details:
Assembly levelNumber of Assemblies
33
31
64
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_943066375.1ContigCALOZK000000000SAMEA14093829
02EB10828SAL
GCA_943118295.1ContigCALPBA000000000SAMEA14093893
2020LSAL10400
GCA_943111355.1ContigCALPAA000000000SAMEA14093855
2003LSAL09534
GCA_943118325.1ContigCALPBB000000000SAMEA14093891
2020LSAL00526
GCA_943114495.1ContigCALPAK000000000SAMEA14093861
2010LSAL01477
GCA_943107665.1ScaffoldCALRIE000000000SAMEA14093851
2003LSAL04108
GCA_943113345.1ContigCALPAF000000000SAMEA14093862
2013LSAL03035
GCA_943116145.1ScaffoldCALPAQ000000000SAMEA14093889
2020LSAL00108
GCA_943114555.1ScaffoldCALPAL000000000SAMEA14093864
2013LSAL03782
GCA_943111705.1ContigCALPAC000000000SAMEA14093856
2006LSAL04589
GCA_943118455.1ContigCALPBD000000000SAMEA14093882
2017LSAL01183
GCA_943119165.1ScaffoldCALPBF000000000SAMEA14093883
2017LSAL01184
GCA_943117895.1ContigCALPAY000000000SAMEA14093886
2018LSAL03967
GCA_943119225.1ContigCALPBL000000000SAMEA14093888
2020LSAL00107
GCA_943066455.1ScaffoldCALOZP000000000SAMEA14093840
10CEB1404SAL
GCA_943066365.1ScaffoldCALOZJ000000000SAMEA14093833
05CEB1377SAL
GCA_943113365.1ScaffoldCALPAG000000000SAMEA14093863
2013LSAL03290
GCA_943066385.1ScaffoldCALOZT000000000SAMEA14093845
12CEB3121SAL
GCA_943066405.1ScaffoldCALOZU000000000SAMEA14093838
09CEB9081SAL
GCA_943116065.1ScaffoldCALPAP000000000SAMEA14372671
2019LSAL01548
GCA_943098655.1ScaffoldCALOZZ000000000SAMEA14093848
12CEB704SAL
GCA_943116715.1ScaffoldCALPAV000000000SAMEA14093890
2020LSAL00427
GCA_943109245.1ContigCALRIF000000000SAMEA14093854
2003LSAL07411
GCA_943107925.1ScaffoldCALRIJ000000000SAMEA14093859
2008LSAL07522
GCA_943066495.1ContigCALOZY000000000SAMEA14093837
08CEB6758SAL
GCA_943066395.1ScaffoldCALOZO000000000SAMEA14093839
10CEB1400SAL
GCA_943109015.1ContigCALRIH000000000SAMEA14093868
2014LSAL05017
GCA_943119195.1ContigCALPBH000000000SAMEA14093872
2015LSAL00020
GCA_943066475.1ScaffoldCALOZQ000000000SAMEA14093847
12CEB4452SAL
GCA_943066425.1ScaffoldCALOZR000000000SAMEA14093834
07CEB434SAL
GCA_943116655.1ScaffoldCALPAU000000000SAMEA14093881
2017LSAL01115
GCA_943108975.1ScaffoldCALRII000000000SAMEA14093869
2014LSAL05038
GCA_943119175.1ScaffoldCALPBG000000000SAMEA14093880
2017LSAL00945
GCA_943113335.1ContigCALPAE000000000SAMEA14093860
2010LSAL00707
GCA_943114145.1ContigCALPAI000000000SAMEA14093870
2015LSAL00017
GCA_943115525.1ScaffoldCALPAM000000000SAMEA14372669
2014LSAL01667
GCA_943116755.1ScaffoldCALPAW000000000SAMEA14093892
2020LSAL00647
GCA_943119205.1ScaffoldCALPBK000000000SAMEA14093877
2016LSAL01586
GCA_943119005.1ScaffoldCALPBE000000000SAMEA14093875
2015LSAL01345
GCA_943113505.1ScaffoldCALPAH000000000SAMEA14093865
2014LSAL02827
GCA_943117835.1ScaffoldCALPAX000000000SAMEA14093879
2017LSAL00518
GCA_943114325.1ContigCALPAJ000000000SAMEA14093849
13CEB2364SAL
GCA_943066335.1ContigCALOZI000000000SAMEA14093830
03EB1400SAL
GCA_943066435.1ScaffoldCALOZX000000000SAMEA14093841
10CEB1456SAL
GCA_943066445.1ContigCALOZW000000000SAMEA14093842
10CEB8631SAL
GCA_943115995.1ScaffoldCALPAO000000000SAMEA14093887
2018LSAL04035
GCA_943066485.1ContigCALOZS000000000SAMEA14093846
12CEB3654SAL
GCA_943120535.1ContigCALPBM000000000SAMEA14093874
2015LSAL01325
GCA_943119215.1ContigCALPBJ000000000SAMEA14093871
2015LSAL00019
GCA_943116485.1ContigCALPAS000000000SAMEA14093876
2015LSAL02197
GCA_943112325.1ContigCALPAD000000000SAMEA14093857
2007LSAL00803
GCA_943066465.1ContigCALOZN000000000SAMEA14093836
08CEB5805SAL
GCA_943111575.1ScaffoldCALPAB000000000SAMEA14093867
2014LSAL04206
GCA_943066415.1ScaffoldCALOZV000000000SAMEA14093843
10CEB8748SAL
GCA_943116515.1ContigCALPAT000000000SAMEA14093878
2016LSAL04104
GCA_943066355.1ContigCALOZM000000000SAMEA14093832
04CEB761SAL
GCA_943119185.1ScaffoldCALPBI000000000SAMEA14372670
2015LSAL01587
GCA_943109415.1ContigCALRIG000000000SAMEA14093853
2003LSAL07052
GCA_943117975.1ScaffoldCALPAZ000000000SAMEA14372674
2019LSAL01934
GCA_943115785.1ScaffoldCALPAN000000000SAMEA14093852
2003LSAL04870
GCA_943066345.1ContigCALOZL000000000SAMEA14093831
03EB4670SAL
GCA_943116465.1ContigCALPAR000000000SAMEA14093873
2015LSAL00969
GCA_943118415.1ContigCALPBC000000000SAMEA14093884
2017LSAL04374
GCA_943110685.1ScaffoldCALRID000000000SAMEA14093858
2008LSAL01345
SRA Data Details
ParameterValue
Data volume, Gbases42
Data volume, Mbytes17081

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