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Accession: PRJNA312217 ID: 312217

Salmonella enterica

GenomeTrakr Project: New Mexico State University, Food Safety Laboratory

See Genome Information for Salmonella enterica
Whole genome sequencing of cultured Salmonella enterica as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events.
AccessionPRJNA312217
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismSalmonella enterica[Taxonomy ID: 28901]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica
SubmissionRegistration date: 6-Dec-2018
FDA
Related Resources
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)660
SRA Experiments688
Other datasets
BioSample687
Assembly660
Assembly details:
Assembly levelNumber of Assemblies
660
660
AssemblyLevelWGSBioSampleStrainTaxonomy
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LZ125_003
GCA_019932335.1ContigABCJHR000000000SAMN21371008
LZ119_003
GCA_019932315.1ContigABCJHT000000000SAMN21371009
LZ119_004
GCA_019932295.1ContigABCJHP000000000SAMN21371006
LZ119_001
GCA_019932275.1ContigABCJHO000000000SAMN21371007
LZ119_002
GCA_019932255.1ContigABCJHN000000000SAMN21371004
LZ114_003
GCA_019932235.1ContigABCJHM000000000SAMN21371003
LZ114_002
GCA_019932215.1ContigABCJHQ000000000SAMN21371005
LZ114_004
GCA_019932135.1ContigABCJHL000000000SAMN21371002
LZ114_001
GCA_019932115.1ContigABCJHK000000000SAMN21371019
LZ140_002
GCA_019932095.1ContigABCJHB000000000SAMN21371015
LZ128_002
GCA_019932075.1ContigABCJHD000000000SAMN21371018
LZ140_001
GCA_019932055.1ContigABCJHF000000000SAMN21371014
LZ128_001
GCA_019932035.1ContigABCJHG000000000SAMN21371016
LZ128_003
GCA_019932015.1ContigABCJHI000000000SAMN21371017
LZ138_001
GCA_019931995.1ContigABCJHC000000000SAMN21371013
LZ125_002
GCA_019931975.1ContigABCJHE000000000SAMN21371012
LZ125_001
GCA_019931945.1ContigABCJGY000000000SAMN21371000
LZ110_002
GCA_019931935.1ContigABCJHJ000000000SAMN21371010
LZ119_005
GCA_019931895.1ContigABCJHA000000000SAMN21371001
LZ110_003
GCA_019931915.1ContigABCJHH000000000SAMN21371011
LZ119_006
GCA_020473065.1ContigABDGEN000000000SAMN19233547
JWC-1015-7TT-CAA44
GCA_020473045.1ContigABDGEM000000000SAMN19233545
JWC-1008-4TT-CAB7
GCA_013533895.2ContigAAUCRF000000000SAMN15458312
JWC-CCAH-1C
GCA_016725785.1ContigAAYTUH000000000SAMN15361573
JWC-1008-1A
GCA_016725765.1ContigAAYTUD000000000SAMN15361572
JWC-1007-14H
GCA_016725725.1ContigAAYTUF000000000SAMN15361571
JWC-1007-14A
GCA_016725705.1ContigAAYTUK000000000SAMN15361570
JWC-1022-17E
GCA_016725685.1ContigAAYTUC000000000SAMN15361569
JWC-1022-14A
GCA_016725665.1ContigAAYTUG000000000SAMN15361586
JWC-1016-17C
GCA_016725625.1ContigAAYTUI000000000SAMN15361567
JWC-1021-09B
GCA_016725605.1ContigAAYTUE000000000SAMN15361568
JWC-1021-10B
GCA_016725585.1ContigAAYTTW000000000SAMN15361584
JWC-1016-11D
GCA_016725565.1ContigAAYTTS000000000SAMN15361583
JWC-1016-11A
GCA_016725545.1ContigAAYTUA000000000SAMN15361575
JWC-1009-3A
GCA_016725525.1ContigAAYTTZ000000000SAMN15361582
JWC-1016-10C
GCA_016725505.1ContigAAYTTX000000000SAMN15361574
JWC-1008-1D
GCA_016725445.1ContigAAYTTR000000000SAMN15361563
JWC-7221
GCA_016725425.1ContigAAYTTV000000000SAMN15361580
JWC-1015-4F
GCA_016725405.1ContigAAYTTY000000000SAMN15361577
JWC-1015-22A
GCA_016725375.1ContigAAYTUB000000000SAMN15361578
JWC-1015-22D
GCA_016725365.1ContigAAYTTU000000000SAMN15361579
JWC-1015-4A
GCA_016725345.1ContigAAYTTQ000000000SAMN15361581
JWC-1016-10A
GCA_016724925.1ContigAAYTTN000000000SAMN15361576
JWC-1009-3C
GCA_016724985.1ContigAAYTTO000000000SAMN15361566
JWC-1009-2RV-CAC7
GCA_016724965.1ContigAAYTTP000000000SAMN15361585
JWC-1016-17A
GCA_005659455.2ContigAADLYC000000000SAMN10965576
JWC-7147
GCA_016167265.1ContigAAXZCJ000000000SAMN15458254
JWC-B2E10
GCA_018393275.1ContigABAMKY000000000SAMN19233543
JWC-1008-12TT-CAB17
GCA_018393235.1ContigABAMLL000000000SAMN19233555
JWC-CCBP-5L
GCA_018393215.1ContigABAMKU000000000SAMN19233546
JWC-1015-3RV-CAA1
GCA_018393195.1ContigABAMLK000000000SAMN19233551
JWC-1023-2H
GCA_018393155.1ContigABAMKS000000000SAMN19233539
JWC-1002-3RV-CA34
GCA_018393115.1ContigABAMLN000000000SAMN19233549
JWC-1016-9A
GCA_018393095.1ContigABAMKR000000000SAMN19233548
JWC-1016-14RV-CAB35
GCA_018391225.1ContigABAMHF000000000SAMN19233554
JWC-AD-1
GCA_018403935.1ContigABAMPE000000000SAMN19233552
JWC-1023-4A
GCA_018404255.1ContigABAMPV000000000SAMN19233538
JWC-1001-1TT-CAA41
GCA_018404215.1ContigABAMPW000000000SAMN19233542
JWC-1007-8TT-CA30
GCA_018404195.1ContigABAMPY000000000SAMN19233553
JWC-7223
GCA_018404055.1ContigABAMPL000000000SAMN19233550
JWC-1023-2A
GCA_018391355.1ContigABAMGZ000000000SAMN19233544
JWC-1008-2RV-CAA8
GCA_018391335.1ContigABAMGS000000000SAMN19233541
JWC-1007-13TT-CA47
GCA_018391315.1ContigABAMGP000000000SAMN19233556
JWC-RRAP-3L
GCA_018391295.1ContigABAMGQ000000000SAMN19233540
JWC-1007-10TT-CA38
GCA_018255055.1ContigABAIVM000000000SAMN18986992
JWC-1008-4RV-CAA14
GCA_018255095.1ContigABAIWB000000000SAMN18986995
JWC-1016-18A
GCA_018255075.1ContigABAIWD000000000SAMN18986994
JWC-1016-13TT-CAA37
GCA_018255015.1ContigABAIVQ000000000SAMN18986991
JWC-1008-3TT-CAB3
GCA_018255035.1ContigABAIVV000000000SAMN18986993
JWC-1009-14RV-CAC29
GCA_018254995.1ContigABAIVP000000000SAMN18987008
JWC-7315
GCA_018254975.1ContigABAIVR000000000SAMN18987007
JWC-1008-6TT-CAB10
GCA_018254955.1ContigABAIVO000000000SAMN18986990
JWC-1001-9RV-CAA15
GCA_018254895.1ContigABAIVN000000000SAMN18987005
JWC-1008-1RV-CAA4
GCA_018254915.1ContigABAIVU000000000SAMN18987004
JWC-1007-9TT-CA34
GCA_018254935.1ContigABAIVS000000000SAMN18987006
JWC-1008-3RV-CAA11
GCA_018254875.1ContigABAIVL000000000SAMN18987003
JWC-1007-9RV-CA8
GCA_018254815.1ContigABAIVG000000000SAMN18986999
JWC-1016-9D
GCA_018254835.1ContigABAIVK000000000SAMN18987000
JWC-1002-10TT-CA5
GCA_018254855.1ContigABAIUX000000000SAMN18987002
JWC-1007-2TT-CA28
GCA_018254795.1ContigABAIVC000000000SAMN18987001
JWC-1007-12TT-CA44
GCA_018254775.1ContigABAIVF000000000SAMN18986998
JWC-1016-6A
GCA_018254715.1ContigABAIVI000000000SAMN18986989
JWC-1001-4RV-CAA17
GCA_018254755.1ContigABAIVD000000000SAMN18986988
JWC-1001-2RV-CAA27
GCA_018255115.1ContigABAIVZ000000000SAMN18986996
JWC-1016-18C
GCA_018255155.1ContigABAIWA000000000SAMN18986997
JWC-1016-21C
GCA_018009775.1ContigABAAZZ000000000SAMN18751518
JWC-1016-8TT-CAA25
GCA_018009755.1ContigABAAYY000000000SAMN18751516
JWC-1016-6TT-CAA20
GCA_018009735.1ContigABAAZE000000000SAMN18751515
JWC-1016-6RV-CAB14
GCA_018009715.1ContigABAAZB000000000SAMN18751514
JWC-1016-5TT-CAA13
GCA_018009695.1ContigABAAYZ000000000SAMN18751512
JWC-1016-3TT-CAA10
GCA_018009675.1ContigABAAYX000000000SAMN18751522
JWC-1021-4TT-CAB48
GCA_018009655.1ContigABAAZD000000000SAMN18751513
JWC-1016-5RV-CAB9
GCA_018009635.1ContigABAAZF000000000SAMN18751523
JWC-1022-01RV-CAB4
GCA_018009615.1ContigABAAZC000000000SAMN18751511
JWC-1016-2TT-CAA3
GCA_018009595.1ContigABAAYW000000000SAMN18751521
JWC-1021-4RV-CAA11
GCA_018009575.1ContigABAAYU000000000SAMN18751519
JWC-1021-2RV-CAA3
GCA_018009555.1ContigABAAYV000000000SAMN18751520
JWC-1021-3RV-CAA5
GCA_018009535.1ContigABAAYS000000000SAMN18751510
JWC-1016-16RV-CAB39
GCA_018009515.1ContigABAAYT000000000SAMN18751509
JWC-1016-14TT-CAA42
GCA_018010215.1ContigABABAA000000000SAMN18751517
JWC-1016-8RV-CAB17
GCA_017807535.1ContigAAZVKX000000000SAMN18365620
JWC-7291
GCA_017809175.1ContigAAZVNY000000000SAMN18620615
JWC-1015-4RV-CAA7
GCA_017809075.1ContigAAZVNT000000000SAMN18620626
JWC-7342
GCA_017811505.1ContigAAZVSA000000000SAMN18620620
JWC-7308
GCA_017812095.1ContigAAZVSN000000000SAMN18620623
JWC-7318
GCA_017823955.1ContigAAZWAE000000000SAMN18620618
JWC-1016-13RV-CAB32
GCA_017823915.1ContigAAZWAG000000000SAMN18620617
JWC-1016-11RV-CAB25
GCA_017823835.1ContigAAZWAB000000000SAMN18620622
JWC-7316At
GCA_017823935.1ContigAAZWAO000000000SAMN18620619
JWC-7307
GCA_017823895.1ContigAAZWAK000000000SAMN18620616
JWC-1015-6TT-CAA38
GCA_017823875.1ContigAAZWAU000000000SAMN18620614
JWC-1015-21RV-CAA20
GCA_017823855.1ContigAAZWAT000000000SAMN18620613
JWC-1015-20TT-CAB14
GCA_017823815.1ContigAAZWAP000000000SAMN18620627
JWC-7343
GCA_017823795.1ContigAAZWAQ000000000SAMN18620624
JWC-7318At
GCA_017823755.1ContigAAZWAH000000000SAMN18620621
JWC-7310
GCA_017823695.1ContigAAZWAR000000000SAMN18620611
JWC-1015-18RV-CAA10
GCA_017823775.1ContigAAZWAS000000000SAMN18620625
JWC-7319
GCA_017823715.1ContigAAZWAI000000000SAMN18620612
JWC-1015-20RV-CAA16
GCA_017754325.1ContigAAZTRU000000000SAMN18365625
JWC-7300
GCA_017754305.1ContigAAZTRW000000000SAMN18365623
JWC-7297
GCA_017754525.1ContigAAZTRY000000000SAMN18365622
JWC-7296
GCA_017754505.1ContigAAZTRT000000000SAMN18365618
JWC-7263
GCA_017754485.1ContigAAZTRX000000000SAMN18365621
JWC-7295
GCA_017754465.1ContigAAZTRQ000000000SAMN18365619
JWC-7279
GCA_017754445.1ContigAAZTRR000000000SAMN18365616
JWC-7258
GCA_017754425.1ContigAAZTRS000000000SAMN18365626
JWC-7306
GCA_017754405.1ContigAAZTRV000000000SAMN18365617
JWC-7262
GCA_017754385.1ContigAAZTRO000000000SAMN18365624
JWC-7299
GCA_017754365.1ContigAAZTRP000000000SAMN18365615
JWC-7250
GCA_017754345.1ContigAAZTRN000000000SAMN18365614
JWC-7246
GCA_017238495.1ContigAAZHMI000000000SAMN17497227
JWC-AD-2
GCA_017238435.1ContigAAZHMG000000000SAMN17497226
NMSU-SA38A
GCA_017068675.1ContigAAZAPZ000000000SAMN17835680
JWC-1016-21A
GCA_017068735.1ContigAAZAQL000000000SAMN17835681
JWC-1016-6D
GCA_024197375.1ContigABGZYZ000000000SAMN29600173
KFB27
GCA_024197355.1ContigABGZYY000000000SAMN29600177
KFB48
GCA_024197575.1ContigABGZZL000000000SAMN29600175
KF39
GCA_024197495.1ContigABGZZG000000000SAMN29600176
KFB44
GCA_024197275.1ContigABGZYT000000000SAMN29600174
KF34
GCA_024197435.1ContigABGZZE000000000SAMN29600172
KFB20
GCA_024197095.1ContigABGZYN000000000SAMN29600169
KFB13
GCA_024200005.1ContigABGZZP000000000SAMN29600170
KFB14
GCA_024200015.1ContigABGZZO000000000SAMN29600171
KFB17
GCA_024441835.1ContigABHGTP000000000SAMN29945697
KFB21
GCA_024441815.1ContigABHGTS000000000SAMN29945700
KFB74
GCA_024441795.1ContigABHGTO000000000SAMN29945696
KFB16
GCA_024441775.1ContigABHGTL000000000SAMN29945685
KFB103
GCA_024441755.1ContigABHGTK000000000SAMN29945684
KFB102
GCA_024442075.1ContigABHGUA000000000SAMN29945691
KFB117
GCA_024442035.1ContigABHGTX000000000SAMN29945688
KFB106
GCA_024442055.1ContigABHGTZ000000000SAMN29945690
KFB111
GCA_024442015.1ContigABHGTY000000000SAMN29945689
KFB110
GCA_024441995.1ContigABHGTV000000000SAMN29945686
KFB104
GCA_024441975.1ContigABHGTW000000000SAMN29945687
KFB105
GCA_024441935.1ContigABHGTR000000000SAMN29945698
KFB24
GCA_024441955.1ContigABHGTU000000000SAMN29945702
KFB9
GCA_024441915.1ContigABHGTN000000000SAMN29945695
KFB15
GCA_024441895.1ContigABHGTQ000000000SAMN29945699
KFB63
GCA_024441875.1ContigABHGTT000000000SAMN29945701
KFB82
GCA_024441855.1ContigABHGTM000000000SAMN29945694
KFB123
GCA_024444135.1ContigABHGUB000000000SAMN29945692
KFB121
GCA_024444215.1ContigABHGUC000000000SAMN29945693
KFB122
GCA_026362155.1ContigABJNAL000000000SAMN31852865
NMSU-DG132
GCA_026362135.1ContigABJNAK000000000SAMN31852861
NMSU-KFB98
GCA_026363035.1ContigABJNBD000000000SAMN31852854
NMSU-KFB83
GCA_026363015.1ContigABJNBE000000000SAMN31852858
NMSU-KFB95
GCA_026362975.1ContigABJNBC000000000SAMN31852853
NMSU-KFB75
GCA_026362995.1ContigABJNBB000000000SAMN31852862
NMSU-KFB99
GCA_026362875.1ContigABJNAY000000000SAMN31852851
NMSU-KFB23
GCA_026367515.1ContigABJNGH000000000SAMN31852859
NMSU-KFB96
GCA_026364595.1ContigABJNCT000000000SAMN31852857
NMSU-KFB92
GCA_026364575.1ContigABJNCU000000000SAMN31852860
NMSU-KFB97
GCA_026364555.1ContigABJNCS000000000SAMN31852856
NMSU-KFB91
GCA_026364535.1ContigABJNCP000000000SAMN31852864
NMSU-KFB131
GCA_026364515.1ContigABJNCR000000000SAMN31852855
NMSU-KFB84
GCA_026364455.1ContigABJNCO000000000SAMN31852866
NMSU-SA2210
GCA_026364435.1ContigABJNCQ000000000SAMN31852863
NMSU-KFB107
GCA_026364415.1ContigABJNCN000000000SAMN31852852
NMSU-KFB28
SRA Data Details
ParameterValue
Data volume, Gbases245
Data volume, Tbytes0.14

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