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Accession: PRJNA850394 ID: 850394

Salmonella enterica serovar Indiana ST17

Here we report on the genomic epidemiology and AMR features of 251 Salmonella enterica serovar Indiana isolates collected from food and human cases presenting with diarrhea in China during 2006-2017.
AccessionPRJNA850394
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsDu P et al., "Dynamics of Antimicrobial Resistance and Genomic Epidemiology of Multidrug-Resistant Salmonella enterica Serovar Indiana ST17 from 2006 to 2017 in China.", mSystems, 2022 Aug 30;7(4):e0025322
SubmissionRegistration date: 17-Jun-2022
Beijing Ditan Hospital, Capital Medical University
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)271
WGS master246
Genomic DNA25
Protein Sequences22654
Publications
PubMed1
PMC1
Other datasets
BioSample251
Assembly251
Assembly details:
Assembly levelNumber of Assemblies
5
246
251
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_024664955.1Complete genomeSAMN29636369
IndS102
GCA_024664835.1Complete genomeSAMN29636370
IndS104
GCA_024664715.1Complete genomeSAMN29636371
s11011
GCA_024664595.1Complete genomeSAMN29636372
s12177
GCA_024664475.1Complete genomeSAMN29636373
s15D023
GCA_024502485.1ContigJANHUJ000000000
SAMN29179536
IndS22
GCA_024502465.1ContigJANHUI000000000
SAMN29179539
IndS25
GCA_024502445.1ContigJANHUH000000000
SAMN29179540
IndS26
GCA_024502425.1ContigJANHUG000000000
SAMN29179541
IndS27
GCA_024502065.1ContigJANHUA000000000
SAMN29179554
IndS40
GCA_024502115.1ContigJANHUF000000000
SAMN29179542
IndS28
GCA_024502105.1ContigJANHUE000000000
SAMN29179544
IndS30
GCA_024502075.1ContigJANHUD000000000
SAMN29179545
IndS31
GCA_024502045.1ContigJANHUC000000000
SAMN29179546
IndS32
GCA_024502025.1ContigJANHTZ000000000
SAMN29179555
IndS43
GCA_024502005.1ContigJANHUB000000000
SAMN29179548
IndS34
GCA_024501985.1ContigJANHTY000000000
SAMN29179556
IndS44
GCA_024501955.1ContigJANHTT000000000
SAMN29179564
IndS52
GCA_024501895.1ContigJANHTX000000000
SAMN29179558
IndS46
GCA_024501935.1ContigJANHTV000000000
SAMN29179562
IndS50
GCA_024501925.1ContigJANHTU000000000
SAMN29179563
IndS51
GCA_024501885.1ContigJANHTW000000000
SAMN29179559
IndS47
GCA_024501865.1ContigJANHTS000000000
SAMN29179566
IndS54
GCA_024501845.1ContigJANHTR000000000
SAMN29179567
IndS55
GCA_024501825.1ContigJANHTQ000000000
SAMN29179569
IndS57
GCA_024501805.1ContigJANHTP000000000
SAMN29179571
IndS59
GCA_024501785.1ContigJANHTO000000000
SAMN29179572
IndS60
GCA_024501755.1ContigJANHTM000000000
SAMN29179574
IndS62
GCA_024501745.1ContigJANHTK000000000
SAMN29179577
IndS65
GCA_024501695.1ContigJANHTL000000000
SAMN29179576
IndS64
GCA_024501725.1ContigJANHTN000000000
SAMN29179573
IndS61
GCA_024501685.1ContigJANHTF000000000
SAMN29179584
IndS72
GCA_024501665.1ContigJANHTE000000000
SAMN29179585
IndS73
GCA_024501645.1ContigJANHTJ000000000
SAMN29179578
IndS66
GCA_024501625.1ContigJANHTD000000000
SAMN29179587
IndS76
GCA_024501605.1ContigJANHTI000000000
SAMN29179579
IndS67
GCA_024501575.1ContigJANHTH000000000
SAMN29179580
IndS68
GCA_024501565.1ContigJANHTC000000000
SAMN29179588
IndS77
GCA_024501545.1ContigJANHTG000000000
SAMN29179581
IndS69
GCA_024501525.1ContigJANHTB000000000
SAMN29179589
IndS79
GCA_024501325.1ContigJANHSL000000000
SAMN29179608
IndS98
GCA_024501315.1ContigJANHSK000000000
SAMN29179609
IndS99
GCA_024500825.1ContigJANHQT000000000
SAMN29179677
IndS173
GCA_024505565.1ContigJANHZM000000000
SAMN29179655
IndS149
GCA_024505525.1ContigJANHZP000000000
SAMN29179583
IndS71
GCA_024505505.1ContigJANHZO000000000
SAMN29179625
IndS118
GCA_024505485.1ContigJANHZN000000000
SAMN29179639
IndS133
GCA_024505465.1ContigJANHZJ000000000
SAMN29179582
IndS70
GCA_024505445.1ContigJANHZG000000000
SAMN29179756
s7029
GCA_024505425.1ContigJANHZL000000000
SAMN29179658
IndS152
GCA_024505405.1ContigJANHZH000000000
SAMN29179523
IndS9
GCA_024505385.1ContigJANHZK000000000
SAMN29179689
IndS185
GCA_024505025.1ContigJANHZE000000000
SAMN29179758
s7031
GCA_024505005.1ContigJANHZC000000000
SAMN29179720
s11066
GCA_024504985.1ContigJANHZF000000000
SAMN29179757
s7030
GCA_024504965.1ContigJANHZD000000000
SAMN29179759
s7040
GCA_024504945.1ContigJANHZI000000000
SAMN29179518
IndS4
GCA_024504925.1ContigJANHYZ000000000
SAMN29179520
IndS6
GCA_024504875.1ContigJANHZA000000000
SAMN29179519
IndS5
GCA_024504905.1ContigJANHZB000000000
SAMN29179517
IndS3
GCA_024504865.1ContigJANHYX000000000
SAMN29179524
IndS10
GCA_024504845.1ContigJANHYY000000000
SAMN29179521
IndS7
GCA_024504825.1ContigJANHYT000000000
SAMN29179538
IndS24
GCA_024504795.1ContigJANHYS000000000
SAMN29179547
IndS33
GCA_024504785.1ContigJANHYV000000000
SAMN29179528
IndS14
GCA_024504745.1ContigJANHYU000000000
SAMN29179537
IndS23
GCA_024504755.1ContigJANHYW000000000
SAMN29179527
IndS13
GCA_024504725.1ContigJANHYN000000000
SAMN29179603
IndS93
GCA_024504705.1ContigJANHYR000000000
SAMN29179553
IndS39
GCA_024504685.1ContigJANHYO000000000
SAMN29179570
IndS58
GCA_024504665.1ContigJANHYQ000000000
SAMN29179557
IndS45
GCA_024504645.1ContigJANHYP000000000
SAMN29179561
IndS49
GCA_024504625.1ContigJANHYL000000000
SAMN29179618
IndS111
GCA_024504605.1ContigJANHYK000000000
SAMN29179621
IndS114
GCA_024504585.1ContigJANHYJ000000000
SAMN29179624
IndS117
GCA_024504565.1ContigJANHYM000000000
SAMN29179604
IndS94
GCA_024504545.1ContigJANHYI000000000
SAMN29179633
IndS127
GCA_024504525.1ContigJANHYE000000000
SAMN29179653
IndS147
GCA_024504505.1ContigJANHYH000000000
SAMN29179641
IndS135
GCA_024504485.1ContigJANHYD000000000
SAMN29179654
IndS148
GCA_024504455.1ContigJANHYG000000000
SAMN29179649
IndS143
GCA_024504445.1ContigJANHYF000000000
SAMN29179652
IndS146
GCA_024504425.1ContigJANHYA000000000
SAMN29179667
IndS163
GCA_024504405.1ContigJANHYB000000000
SAMN29179657
IndS151
GCA_024504385.1ContigJANHYC000000000
SAMN29179656
IndS150
GCA_024504355.1ContigJANHXY000000000
SAMN29179674
IndS170
GCA_024504345.1ContigJANHXZ000000000
SAMN29179671
IndS167
GCA_024504325.1ContigJANHXU000000000
SAMN29179681
IndS177
GCA_024504305.1ContigJANHXW000000000
SAMN29179679
IndS175
GCA_024504285.1ContigJANHXV000000000
SAMN29179680
IndS176
GCA_024504265.1ContigJANHXX000000000
SAMN29179675
IndS171
GCA_024504245.1ContigJANHXT000000000
SAMN29179682
IndS178
GCA_024504165.1ContigJANHXO000000000
SAMN29179701
IndS198
GCA_024504195.1ContigJANHXP000000000
SAMN29179700
IndS197
GCA_024504175.1ContigJANHXQ000000000
SAMN29179699
IndS196
GCA_024504155.1ContigJANHXS000000000
SAMN29179683
IndS179
GCA_024504145.1ContigJANHXR000000000
SAMN29179688
IndS184
GCA_024504125.1ContigJANHXN000000000
SAMN29179702
IndS199
GCA_024504065.1ContigJANHXM000000000
SAMN29179703
IndS200
GCA_024504105.1ContigJANHXL000000000
SAMN29179704
IndS201
GCA_024504075.1ContigJANHXK000000000
SAMN29179709
IndS206
GCA_024504045.1ContigJANHXJ000000000
SAMN29179711
IndS208
GCA_024504025.1ContigJANHXG000000000
SAMN29179716
IndS213
GCA_024504005.1ContigJANHXF000000000
SAMN29179717
s10100
GCA_024503955.1ContigJANHXE000000000
SAMN29179718
s11012
GCA_024503945.1ContigJANHXH000000000
SAMN29179715
IndS212
GCA_024503965.1ContigJANHXI000000000
SAMN29179712
IndS209
GCA_024503925.1ContigJANHXD000000000
SAMN29179725
s11229
GCA_024503905.1ContigJANHXA000000000
SAMN29179732
s12193
GCA_024503885.1ContigJANHWZ000000000
SAMN29179733
s12194
GCA_024503865.1ContigJANHXB000000000
SAMN29179730
s12171
GCA_024503845.1ContigJANHXC000000000
SAMN29179729
s12159
GCA_024503805.1ContigJANHWV000000000
SAMN29179743
s15D058
GCA_024503825.1ContigJANHWX000000000
SAMN29179737
s13069
GCA_024503765.1ContigJANHWU000000000
SAMN29179747
s16025
GCA_024503785.1ContigJANHWW000000000
SAMN29179741
s15D048
GCA_024503745.1ContigJANHWY000000000
SAMN29179734
s12197
GCA_024503725.1ContigJANHWP000000000
SAMN29179522
IndS8
GCA_024503705.1ContigJANHWQ000000000
SAMN29179516
IndS2
GCA_024503685.1ContigJANHWS000000000
SAMN29179760
s9079
GCA_024503655.1ContigJANHWR000000000
SAMN29179515
IndS1
GCA_024503645.1ContigJANHWT000000000
SAMN29179749
s16079
GCA_024503625.1ContigJANHWM000000000
SAMN29179529
IndS15
GCA_024503605.1ContigJANHWO000000000
SAMN29179525
IndS11
GCA_024503565.1ContigJANHWK000000000
SAMN29179534
IndS20
GCA_024503545.1ContigJANHWL000000000
SAMN29179532
IndS18
GCA_024503555.1ContigJANHWN000000000
SAMN29179526
IndS12
GCA_024503525.1ContigJANHWH000000000
SAMN29179549
IndS35
GCA_024503505.1ContigJANHWJ000000000
SAMN29179535
IndS21
GCA_024503485.1ContigJANHWI000000000
SAMN29179543
IndS29
GCA_024503465.1ContigJANHWG000000000
SAMN29179550
IndS36
GCA_024503445.1ContigJANHWF000000000
SAMN29179551
IndS37
GCA_024503425.1ContigJANHWA000000000
SAMN29179575
IndS63
GCA_024503385.1ContigJANHWC000000000
SAMN29179565
IndS53
GCA_024503395.1ContigJANHWD000000000
SAMN29179560
IndS48
GCA_024503365.1ContigJANHWE000000000
SAMN29179552
IndS38
GCA_024503345.1ContigJANHWB000000000
SAMN29179568
IndS56
GCA_024503305.1ContigJANHVX000000000
SAMN29179614
IndS106
GCA_024503325.1ContigJANHVZ000000000
SAMN29179586
IndS74
GCA_024503255.1ContigJANHVW000000000
SAMN29179617
IndS109
GCA_024503285.1ContigJANHVY000000000
SAMN29179590
IndS80
GCA_024503245.1ContigJANHVV000000000
SAMN29179629
IndS123
GCA_024503225.1ContigJANHVU000000000
SAMN29179634
IndS128
GCA_024503185.1ContigJANHVT000000000
SAMN29179662
IndS158
GCA_024503195.1ContigJANHVR000000000
SAMN29179684
IndS180
GCA_024503165.1ContigJANHVS000000000
SAMN29179664
IndS160
GCA_024503145.1ContigJANHVQ000000000
SAMN29179685
IndS181
GCA_024503125.1ContigJANHVM000000000
SAMN29179714
IndS211
GCA_024503105.1ContigJANHVP000000000
SAMN29179686
IndS182
GCA_024503055.1ContigJANHVO000000000
SAMN29179687
IndS183
GCA_024503085.1ContigJANHVN000000000
SAMN29179713
IndS210
GCA_024503045.1ContigJANHVL000000000
SAMN29179719
s11033
GCA_024503025.1ContigJANHVJ000000000
SAMN29179722
s11092
GCA_024503005.1ContigJANHVH000000000
SAMN29179724
s11094
GCA_024502985.1ContigJANHVK000000000
SAMN29179721
s11091
GCA_024502965.1ContigJANHVI000000000
SAMN29179723
s11093
GCA_024502945.1ContigJANHVG000000000
SAMN29179726
s12120
GCA_024502925.1ContigJANHVC000000000
SAMN29179735
s13028
GCA_024502905.1ContigJANHVE000000000
SAMN29179728
s12151
GCA_024502885.1ContigJANHVA000000000
SAMN29179738
s14D10
GCA_024502865.1ContigJANHVD000000000
SAMN29179731
s12188
GCA_024502825.1ContigJANHUV000000000
SAMN29179745
s15D113
GCA_024502845.1ContigJANHVF000000000
SAMN29179727
s12150
GCA_024502805.1ContigJANHVB000000000
SAMN29179736
s13051
GCA_024502785.1ContigJANHUY000000000
SAMN29179740
s15D030
GCA_024502765.1ContigJANHUZ000000000
SAMN29179739
s14D102
GCA_024502745.1ContigJANHUX000000000
SAMN29179742
s15D050
GCA_024502725.1ContigJANHUU000000000
SAMN29179746
s15D135
GCA_024502685.1ContigJANHUT000000000
SAMN29179748
s16054
GCA_024502705.1ContigJANHUW000000000
SAMN29179744
s15D077
GCA_024502665.1ContigJANHUQ000000000
SAMN29179752
s17135
GCA_024502635.1ContigJANHUP000000000
SAMN29179753
s17137
GCA_024502625.1ContigJANHUS000000000
SAMN29179750
s16096
GCA_024502605.1ContigJANHUO000000000
SAMN29179754
s17140
GCA_024502585.1ContigJANHUR000000000
SAMN29179751
s16111
GCA_024502565.1ContigJANHUK000000000
SAMN29179533
IndS19
GCA_024502545.1ContigJANHUN000000000
SAMN29179755
s17141
GCA_024502505.1ContigJANHUL000000000
SAMN29179531
IndS17
GCA_024502515.1ContigJANHUM000000000
SAMN29179530
IndS16
GCA_024546585.1ContigJANHSZ000000000
SAMN29179592
IndS82
GCA_024546565.1ContigJANHTA000000000
SAMN29179591
IndS81
GCA_024546525.1ContigJANHSY000000000
SAMN29179593
IndS83
GCA_024546505.1ContigJANHSX000000000
SAMN29179594
IndS84
GCA_024546485.1ContigJANHSW000000000
SAMN29179595
IndS85
GCA_024546445.1ContigJANHSV000000000
SAMN29179596
IndS86
GCA_024546345.1ContigJANHSU000000000
SAMN29179597
IndS87
GCA_024546365.1ContigJANHST000000000
SAMN29179598
IndS88
GCA_024546325.1ContigJANHSS000000000
SAMN29179599
IndS89
GCA_024546305.1ContigJANHSR000000000
SAMN29179600
IndS90
GCA_024546245.1ContigJANHSQ000000000
SAMN29179601
IndS91
GCA_024546205.1ContigJANHSP000000000
SAMN29179602
IndS92
GCA_024546185.1ContigJANHSN000000000
SAMN29179606
IndS96
GCA_024546145.1ContigJANHSM000000000
SAMN29179607
IndS97
GCA_024546125.1ContigJANHSO000000000
SAMN29179605
IndS95
GCA_024546065.1ContigJANHSJ000000000
SAMN29179610
IndS100
GCA_024546045.1ContigJANHSI000000000
SAMN29179611
IndS101
GCA_024546005.1ContigJANHSH000000000
SAMN29179612
IndS103
GCA_024545985.1ContigJANHSF000000000
SAMN29179615
IndS107
GCA_024545945.1ContigJANHSE000000000
SAMN29179616
IndS108
GCA_024545885.1ContigJANHSG000000000
SAMN29179613
IndS105
GCA_024545865.1ContigJANHSD000000000
SAMN29179619
IndS112
GCA_024545805.1ContigJANHSC000000000
SAMN29179620
IndS113
GCA_024545785.1ContigJANHSB000000000
SAMN29179622
IndS115
GCA_024545755.1ContigJANHSA000000000
SAMN29179623
IndS116
GCA_024545745.1ContigJANHRZ000000000
SAMN29179626
IndS119
GCA_024545645.1ContigJANHRY000000000
SAMN29179627
IndS121
GCA_024545605.1ContigJANHRV000000000
SAMN29179631
IndS125
GCA_024545585.1ContigJANHRX000000000
SAMN29179628
IndS122
GCA_024545565.1ContigJANHRW000000000
SAMN29179630
IndS124
GCA_024545545.1ContigJANHRU000000000
SAMN29179632
IndS126
GCA_024545525.1ContigJANHRT000000000
SAMN29179635
IndS129
GCA_024545505.1ContigJANHRS000000000
SAMN29179636
IndS130
GCA_024545485.1ContigJANHRQ000000000
SAMN29179638
IndS132
GCA_024545465.1ContigJANHRR000000000
SAMN29179637
IndS131
GCA_024545425.1ContigJANHRP000000000
SAMN29179640
IndS134
GCA_024545405.1ContigJANHRO000000000
SAMN29179642
IndS136
GCA_024545365.1ContigJANHRL000000000
SAMN29179645
IndS139
GCA_024545325.1ContigJANHRN000000000
SAMN29179643
IndS137
GCA_024545265.1ContigJANHRK000000000
SAMN29179646
IndS140
GCA_024545245.1ContigJANHRM000000000
SAMN29179644
IndS138
GCA_024545205.1ContigJANHRJ000000000
SAMN29179647
IndS141
GCA_024545165.1ContigJANHRH000000000
SAMN29179650
IndS144
GCA_024545145.1ContigJANHRI000000000
SAMN29179648
IndS142
GCA_024545105.1ContigJANHRG000000000
SAMN29179651
IndS145
GCA_024545085.1ContigJANHRE000000000
SAMN29179660
IndS154
GCA_024545005.1ContigJANHRF000000000
SAMN29179659
IndS153
GCA_024544965.1ContigJANHRD000000000
SAMN29179661
IndS155
GCA_024544945.1ContigJANHRC000000000
SAMN29179663
IndS159
GCA_024544905.1ContigJANHQZ000000000
SAMN29179668
IndS164
GCA_024544885.1ContigJANHRA000000000
SAMN29179666
IndS162
GCA_024544825.1ContigJANHRB000000000
SAMN29179665
IndS161
GCA_024544785.1ContigJANHQY000000000
SAMN29179669
IndS165
GCA_024544725.1ContigJANHQX000000000
SAMN29179670
IndS166
GCA_024544685.1ContigJANHQU000000000
SAMN29179676
IndS172
GCA_024544665.1ContigJANHQV000000000
SAMN29179673
IndS169
GCA_024544645.1ContigJANHQW000000000
SAMN29179672
IndS168
GCA_024544585.1ContigJANHQS000000000
SAMN29179678
IndS174
GCA_024544515.1ContigJANHQP000000000
SAMN29179692
IndS188
GCA_024544485.1ContigJANHQR000000000
SAMN29179690
IndS186
GCA_024544465.1ContigJANHQQ000000000
SAMN29179691
IndS187
GCA_024544445.1ContigJANHQO000000000
SAMN29179693
IndS189
GCA_024544385.1ContigJANHQM000000000
SAMN29179695
IndS191
GCA_024544345.1ContigJANHQN000000000
SAMN29179694
IndS190
GCA_024544305.1ContigJANHQK000000000
SAMN29179697
IndS194
GCA_024544265.1ContigJANHQL000000000
SAMN29179696
IndS192
GCA_024544245.1ContigJANHQJ000000000
SAMN29179698
IndS195
GCA_024544185.1ContigJANHQI000000000
SAMN29179705
IndS202
GCA_024544165.1ContigJANHQG000000000
SAMN29179707
IndS204
GCA_024544145.1ContigJANHQF000000000
SAMN29179708
IndS205
GCA_024544125.1ContigJANHQE000000000
SAMN29179710
IndS207
GCA_024544105.1ContigJANHQH000000000
SAMN29179706
IndS203

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