ID 840723 - BioProject

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Accession: PRJEB52638 ID: 840723

EMG produced TPA metagenomics assembly of PRJNA757176 data set (Sus scrofa Metagenome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA757176, and was assembled with metaSPAdes v3. More...

Accession	PRJEB52638
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 20-May-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	2930
WGS master	103
Publications
PubMed	1
PMC	1
Other datasets
BioSample	103
Assembly	103

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

103
103

Assembly	WGS	BioSample	Taxonomy
GCA_945868645.1	CAMBME000000000	SAMEA110402573	Acidaminococcus fermentans
GCA_945871635.1	CAMBWN000000000	SAMEA110402605	Acidaminococcus timonensis
GCA_945875695.1	CAMCLH000000000	SAMEA110402633	Actinobacillus porcinus
GCA_945871775.1	CAMBXD000000000	SAMEA110402634	Actinobacillus porcitonsillarum
GCA_945867695.1	CAMBIU000000000	SAMEA110402612	Bacillus velezensis
GCA_945873055.1	CAMCBR000000000	SAMEA110402638	Desulfovibrio piger
GCA_945867305.1	CAMBIA000000000	SAMEA110402621	Escherichia coli
GCA_945873275.1	CAMCCM000000000	SAMEA110402555	Lactobacillus amylovorus
GCA_945868605.1	CAMBMA000000000	SAMEA110402537	Lactobacillus crispatus
GCA_945876915.1	CAMCPX000000000	SAMEA110402587	Lactobacillus delbrueckii
GCA_945864045.1	CAMBAB000000000	SAMEA110402574	Lactobacillus delbrueckii
GCA_945872645.1	CAMCAH000000000	SAMEA110402557	Lactobacillus equicursoris
GCA_945872025.1	CAMBXT000000000	SAMEA110402609	Lactobacillus johnsonii
GCA_945868105.1	CAMBKS000000000	SAMEA110402541	Methanobrevibacter ruminantium
GCA_945868565.1	CAMBLZ000000000	SAMEA110402561	Methanobrevibacter smithii
GCA_945872675.1	CAMCAE000000000	SAMEA110402591	Mitsuokella multacida
GCA_945876075.1	CAMCMK000000000	SAMEA110402567	Mobilibacterium timonense
GCA_945871715.1	CAMBWY000000000	SAMEA110402639	Phascolarctobacterium succinatutens
GCA_945873255.1	CAMCCF000000000	SAMEA110402539	Streptococcus ferus
GCA_945876885.1	CAMCPV000000000	SAMEA110402585	Streptococcus gallolyticus
GCA_945868155.1	CAMBKD000000000	SAMEA110402568	Streptococcus suis
GCA_945870055.1	CAMBQO000000000	SAMEA110402540	Streptococcus vestibularis
GCA_945868175.1	CAMBJX000000000	SAMEA110402563	Veillonella parvula
GCA_945872635.1	CAMCAF000000000	SAMEA110402556	[Eubacterium] saphenum
GCA_945868635.1	CAMBMI000000000	SAMEA110402596	uncultured Alistipes sp.
GCA_945874735.1	CAMCHI000000000	SAMEA110402544	uncultured Arcanobacterium sp.
GCA_945867965.1	CAMBJT000000000	SAMEA110402580	uncultured Atopobium sp.
GCA_945871755.1	CAMBWV000000000	SAMEA110402615	uncultured Bacteroidales bacterium
GCA_945875675.1	CAMCLL000000000	SAMEA110402603	uncultured Bacteroidales bacterium
GCA_945871985.1	CAMBXW000000000	SAMEA110402629	uncultured Bacteroidales bacterium
GCA_945872755.1	CAMCAQ000000000	SAMEA110402604	uncultured Bacteroidales bacterium
GCA_945873465.1	CAMCDI000000000	SAMEA110402593	uncultured Bacteroidales bacterium
GCA_945877095.1	CAMCQQ000000000	SAMEA110402614	uncultured Bacteroidales bacterium
GCA_945867315.1	CAMBHY000000000	SAMEA110402592	uncultured Bacteroidales bacterium
GCA_945871855.1	CAMBXI000000000	SAMEA110402630	uncultured Campylobacter sp.
GCA_945873065.1	CAMCBN000000000	SAMEA110402548	uncultured Candidatus Saccharibacteria bacterium
GCA_945872155.1	CAMBYK000000000	SAMEA110402553	uncultured Candidatus Saccharibacteria bacterium
GCA_945868585.1	CAMBLX000000000	SAMEA110402616	uncultured Clostridia bacterium
GCA_945867295.1	CAMBHU000000000	SAMEA110402617	uncultured Clostridia bacterium
GCA_945871665.1	CAMBWZ000000000	SAMEA110402619	uncultured Clostridia bacterium
GCA_945876935.1	CAMCQA000000000	SAMEA110402558	uncultured Clostridia bacterium
GCA_945876905.1	CAMCQJ000000000	SAMEA110402562	uncultured Clostridia bacterium
GCA_945877055.1	CAMCQP000000000	SAMEA110402594	uncultured Clostridia bacterium
GCA_945868505.1	CAMBLO000000000	SAMEA110402636	uncultured Clostridia bacterium
GCA_945868655.1	CAMBMF000000000	SAMEA110402571	uncultured Clostridia bacterium
GCA_945867175.1	CAMBHO000000000	SAMEA110402623	uncultured Clostridia bacterium
GCA_945871955.1	CAMBXR000000000	SAMEA110402586	uncultured Clostridium sp.
GCA_945873555.1	CAMCDJ000000000	SAMEA110402608	uncultured Clostridium sp.
GCA_945877035.1	CAMCQH000000000	SAMEA110402601	uncultured Clostridium sp.
GCA_945877065.1	CAMCQO000000000	SAMEA110402554	uncultured Coriobacteriaceae bacterium
GCA_945876925.1	CAMCQD000000000	SAMEA110402582	uncultured Dermatophilus sp.
GCA_945871415.1	CAMBWG000000000	SAMEA110402625	uncultured Desulfovibrio sp.
GCA_945873645.1	CAMCDV000000000	SAMEA110402566	uncultured Dialister sp.
GCA_945875435.1	CAMCKH000000000	SAMEA110402550	uncultured Erysipelotrichaceae bacterium
GCA_945877075.1	CAMCQS000000000	SAMEA110402578	uncultured Erysipelotrichaceae bacterium
GCA_945872595.1	CAMCAA000000000	SAMEA110402564	uncultured Erysipelotrichaceae bacterium
GCA_945870735.1	CAMBTG000000000	SAMEA110402576	uncultured Erysipelotrichaceae bacterium
GCA_945877255.1	CAMCRE000000000	SAMEA110402543	uncultured Erysipelotrichaceae bacterium
GCA_945867155.1	CAMBHL000000000	SAMEA110402565	uncultured Eubacteriaceae bacterium
GCA_945871845.1	CAMBXH000000000	SAMEA110402577	uncultured Eubacterium sp.
GCA_945871825.1	CAMBXC000000000	SAMEA110402600	uncultured Firmicutes bacterium
GCA_945872525.1	CAMBZI000000000	SAMEA110402627	uncultured Fusobacterium sp.
GCA_945869755.1	CAMBPW000000000	SAMEA110402549	uncultured Gemella sp.
GCA_945870745.1	CAMBTA000000000	SAMEA110402606	uncultured Helicobacter sp.
GCA_945871935.1	CAMBXS000000000	SAMEA110402624	uncultured Lachnospiraceae bacterium
GCA_945867225.1	CAMBHT000000000	SAMEA110402622	uncultured Lachnospiraceae bacterium
GCA_945863935.1	CAMAZX000000000	SAMEA110402579	uncultured Lachnospiraceae bacterium
GCA_945868485.1	CAMBLS000000000	SAMEA110402626	uncultured Lachnospiraceae bacterium
GCA_945867145.1	CAMBHN000000000	SAMEA110402581	uncultured Lactobacillus sp.
GCA_945870695.1	CAMBTH000000000	SAMEA110402538	uncultured Lactobacillus sp.
GCA_945872695.1	CAMCAL000000000	SAMEA110402584	uncultured Lactobacillus sp.
GCA_945873395.1	CAMCCW000000000	SAMEA110402575	uncultured Lactobacillus sp.
GCA_945872125.1	CAMBYM000000000	SAMEA110402552	uncultured Lactobacillus sp.
GCA_945875785.1	CAMCLQ000000000	SAMEA110402547	uncultured Lactobacillus sp.
GCA_945871345.1	CAMBVD000000000	SAMEA110402610	uncultured Lactobacillus sp.
GCA_945872665.1	CAMCAG000000000	SAMEA110402590	uncultured Lactobacillus sp.
GCA_945875795.1	CAMCLP000000000	SAMEA110402589	uncultured Lactobacillus sp.
GCA_945869835.1	CAMBQB000000000	SAMEA110402545	uncultured Lactobacillus sp.
GCA_945868525.1	CAMBLU000000000	SAMEA110402559	uncultured Megasphaera sp.
GCA_945870685.1	CAMBSY000000000	SAMEA110402572	uncultured Megasphaera sp.
GCA_945872765.1	CAMCAR000000000	SAMEA110402597	uncultured Megasphaera sp.
GCA_945877355.1	CAMCRT000000000	SAMEA110402560	uncultured Mitsuokella sp.
GCA_945873115.1	CAMCBT000000000	SAMEA110402618	uncultured Mitsuokella sp.
GCA_945873045.1	CAMCBP000000000	SAMEA110402620	uncultured Mollicutes bacterium
GCA_945873075.1	CAMCBS000000000	SAMEA110402607	uncultured Moraxella sp.
GCA_945868625.1	CAMBMG000000000	SAMEA110402595	uncultured Phascolarctobacterium sp.
GCA_945867245.1	CAMBHQ000000000	SAMEA110402611	uncultured Porphyromonas sp.
GCA_945868535.1	CAMBLW000000000	SAMEA110402613	uncultured Prevotella sp.
GCA_945875065.1	CAMCJC000000000	SAMEA110402542	uncultured Propionibacteriaceae bacterium
GCA_945871465.1	CAMBWB000000000	SAMEA110402628	uncultured Roseburia sp.
GCA_945871765.1	CAMBWS000000000	SAMEA110402635	uncultured Ruminococcus sp.
GCA_945869875.1	CAMBQL000000000	SAMEA110402569	uncultured Selenomonadaceae bacterium
GCA_945868545.1	CAMBLT000000000	SAMEA110402602	uncultured Solobacterium sp.
GCA_945867125.1	CAMBHP000000000	SAMEA110402599	uncultured Solobacterium sp.
GCA_945863585.1	CAMAZL000000000	SAMEA110402570	uncultured Solobacterium sp.
GCA_945864085.1	CAMBAD000000000	SAMEA110402551	uncultured Streptococcus sp.
GCA_945876895.1	CAMCQB000000000	SAMEA110402588	uncultured Streptococcus sp.
GCA_945873035.1	CAMCBQ000000000	SAMEA110402632	uncultured Veillonella sp.
GCA_945864285.1	CAMBAO000000000	SAMEA110402583	uncultured Veillonella sp.
GCA_945867815.1	CAMBIX000000000	SAMEA110402546	uncultured Veillonellaceae bacterium
GCA_945868615.1	CAMBMB000000000	SAMEA110402637	uncultured Veillonellaceae bacterium
GCA_945873005.1	CAMCBO000000000	SAMEA110402631	uncultured Veillonellaceae bacterium
GCA_945871045.1	CAMBUC000000000	SAMEA110402598	uncultured bacterium

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EMG produced TPA metagenomics assembly of PRJNA757176 data set (Sus scrofa Metagenome).

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