ID 689092 - BioProject

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Accession: PRJNA689092 ID: 689092

Xanthomonas campestris genomes from cruciferous weeds and crops

Determine the relationship between isolates of Xanthomonas campestris from California and New York to crop isolates from global collections

Accession	PRJNA689092
Data Type	Raw sequence reads
Scope	Multispecies
Publications	Dubrow ZE et al., "Cruciferous Weed Isolates of Xanthomonas campestris Yield Insight into Pathovar Genomic Relationships and Genetic Determinants of Host and Tissue Specificity.", Mol Plant Microbe Interact, 2022 Sep;35(9):791-802
Grants	"Pre Doctoral Fellowship" (Grant ID 2019-67011-29501, United States Dept of Agriculture) "New York Cabbage Research and Development Board Grant" (Grant ID None, New York Cabbage Research and Development Board)
Submission	Registration date: 2-Jan-2021 Cornell University
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	88
SRA Experiments	60
Protein Sequences	247537
Publications
PubMed	1
Other datasets
BioSample	60
Assembly	60

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Chromosome

Total

59
1
60

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_045504475.1	1	SAMN17198935	0474	Xanthomonas campestris pv. campestris
GCA_020008105.1	1	SAMN17198921	18048	Xanthomonas campestris pv. incanae
GCA_028750335.1	1	SAMN17198925	10-16	Xanthomonas campestris
GCA_028749605.1	2	SAMN17198953	CFBP1606	Xanthomonas campestris pv. incanae
GCA_028749585.1	1	SAMN17198954	5053	Xanthomonas campestris
GCA_028749565.1	1	SAMN17198955	5055	Xanthomonas campestris pv. raphani
GCA_028749545.1	2	SAMN17198956	CFBP6943	Xanthomonas campestris pv. campestris
GCA_028750275.1	1	SAMN17198926	16-8	Xanthomonas campestris pv. incanae
GCA_028750155.1	2	SAMN17198927	08305	Xanthomonas campestris pv. campestris
GCA_028750135.1	3	SAMN17198928	3054	Xanthomonas campestris
GCA_028750115.1	2	SAMN17198929	5057	Xanthomonas campestris pv. incanae
GCA_028750095.1	2	SAMN17198930	4053	Xanthomonas campestris pv. incanae
GCA_028750075.1	1	SAMN17198931	11-19	Xanthomonas campestris
GCA_028750055.1	2	SAMN17198932	8-14	Xanthomonas campestris pv. incanae
GCA_028750035.1	1	SAMN17198933	08288	Xanthomonas campestris pv. campestris
GCA_028750015.1	2	SAMN17198934	10103	Xanthomonas campestris pv. campestris
GCA_028749945.1	1	SAMN17198937	0793	Xanthomonas campestris pv. campestris
GCA_028749925.1	1	SAMN17198936	0659	Xanthomonas campestris pv. campestris
GCA_028749905.1	2	SAMN17198939	08284	Xanthomonas campestris pv. campestris
GCA_028749885.1	2	SAMN17198940	12049	Xanthomonas campestris pv. campestris
GCA_028749865.1	1	SAMN17198938	0792	Xanthomonas campestris pv. campestris
GCA_028749845.1	1	SAMN17198943	10090	Xanthomonas campestris pv. campestris
GCA_028749825.1	4	SAMN17198941	12112	Xanthomonas campestris pv. campestris
GCA_028749805.1	2	SAMN17198942	13108G	Xanthomonas campestris pv. campestris
GCA_028749785.1	2	SAMN17198944	08290	Xanthomonas campestris pv. campestris
GCA_028749765.1	1	SAMN17198945	10108	Xanthomonas campestris pv. campestris
GCA_028749745.1	1	SAMN17198946	576	Xanthomonas campestris pv. raphani
GCA_028749725.1	1	SAMN17198947	609	Xanthomonas campestris pv. raphani
GCA_028749705.1	1	SAMN17198949	CFBP12825	Xanthomonas campestris pv. campestris
GCA_028749685.1	1	SAMN17198948	719	Xanthomonas campestris pv. raphani
GCA_028749665.1	2	SAMN17198951	CFBP6690	Xanthomonas campestris pv. incanae
GCA_028749645.1	1	SAMN17198950	CFBP1371	Xanthomonas campestris pv. incanae
GCA_028749625.1	1	SAMN17198952	CFBP5824	Xanthomonas campestris
GCA_028750655.1	2	SAMN17198910	42-1	Xanthomonas campestris pv. campestris
GCA_028750635.1	1	SAMN17198912	42-4	Xanthomonas campestris pv. campestris
GCA_028750615.1	2	SAMN17198911	42-2	Xanthomonas campestris pv. campestris
GCA_028750555.1	1	SAMN17198916	27-6	Xanthomonas campestris pv. campestris
GCA_028750575.1	1	SAMN17198914	25-4	Xanthomonas campestris pv. campestris
GCA_028750595.1	1	SAMN17198913	15-1	Xanthomonas campestris pv. campestris
GCA_028750455.1	1	SAMN17198920	55-2	Xanthomonas campestris pv. campestris
GCA_028750435.1	1	SAMN17198919	55-1	Xanthomonas campestris pv. campestris
GCA_028750415.1	1	SAMN17198918	28-1	Xanthomonas campestris pv. campestris
GCA_028750535.1	1	SAMN17198917	27-9	Xanthomonas campestris pv. campestris
GCA_028750395.1	3	SAMN17198922	10006	Xanthomonas campestris pv. campestris
GCA_028750375.1	2	SAMN17198924	11085	Xanthomonas campestris pv. campestris
GCA_028750515.1	1	SAMN17198915	27-10	Xanthomonas campestris pv. campestris
GCA_028750355.1	3	SAMN17198923	10008	Xanthomonas campestris pv. campestris
GCA_028751505.1	1	SAMN17198897	54-2	Xanthomonas campestris pv. campestris
GCA_028751465.1	1	SAMN17198898	54-3	Xanthomonas campestris pv. campestris
GCA_028751435.1	1	SAMN17198899	30-1	Xanthomonas campestris pv. campestris
GCA_028751395.1	1	SAMN17198901	40-2	Xanthomonas campestris pv. campestris
GCA_028751375.1	2	SAMN17198900	39-3	Xanthomonas campestris pv. campestris
GCA_028751355.1	1	SAMN17198902	29-5	Xanthomonas campestris pv. campestris
GCA_028751335.1	1	SAMN17198903	29-6	Xanthomonas campestris pv. campestris
GCA_028751315.1	2	SAMN17198904	33-1	Xanthomonas campestris pv. campestris
GCA_028751295.1	1	SAMN17198905	33-2	Xanthomonas campestris pv. campestris
GCA_028751275.1	1	SAMN17198906	33-4	Xanthomonas campestris pv. campestris
GCA_028751255.1	1	SAMN17198907	33-5	Xanthomonas campestris pv. campestris
GCA_028751235.1	1	SAMN17198908	42-3	Xanthomonas campestris pv. campestris
GCA_028751215.1	1	SAMN17198909	66-2	Xanthomonas campestris pv. campestris

SRA Data Details

Parameter	Value
Data volume, Gbases	185
Data volume, Mbytes	46731

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Xanthomonas campestris genomes from cruciferous weeds and crops

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