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Accession: PRJNA970254 ID: 970254

Genomic Catalog of Human Bladder Bacteria

We have developed a bladder-specific bacterial reference database consisting of 1134 genomes to aid in genomic, functional, and experimental analyses of the human bladder microbiota. More...
AccessionPRJNA970254
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsDu J et al., "Cataloging the phylogenetic diversity of human bladder bacterial isolates.", Genome Biol, 2024 Mar 21;25(1):75
SubmissionRegistration date: 8-May-2023
Loyola University Chicago
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)715
SRA Experiments634
Publications
PubMed1
PMC1
Other datasets
BioSample759
Assembly717
Assembly details:
Assembly levelNumber of Assemblies
4
713
717
AssemblyLevelWGSBioSampleInfraspecies IdTaxonomy
GCA_030233825.1ContigJASPBZ000000000SAMN35153921
UMB7766-LJ435B
GCA_030230805.1ContigJASPEE000000000SAMN35153861
UMB10432.1
GCA_030227875.1ContigJASPAD000000000SAMN35153969
UMB8039B
GCA_030226925.1ContigJASOZE000000000SAMN34998651
UMB10319
GCA_030234085.1ContigJASPEK000000000SAMN35153855
UMB6473-AN360BR
GCA_030227605.1ContigJASPAN000000000SAMN35153959
UMB1218B.3
GCA_030233955.1ContigJASPCS000000000SAMN35153902
UMB8039A.2
GCA_030228565.1ContigJASPAE000000000SAMN35153968
UMB8039B
GCA_030230355.1ContigJASPCR000000000SAMN35153903
UMB8041A
GCA_030224125.1ContigJASOTT000000000SAMN34998794
UMB8041B
GCA_030230545.1ContigJASPDK000000000SAMN35153884
UMB3161A
GCA_030230445.1ContigJASPCY000000000SAMN35153896
UMB7835A
GCA_030230325.1ContigJASPDJ000000000SAMN35153885
UMB3164A
GCA_030230305.1ContigJASPCQ000000000SAMN35153904
UMB8041A
GCA_030227925.1ContigJASPBH000000000SAMN35153939
UMB9819B
GCA_030227585.1ContigJASPAC000000000SAMN35153970
UMB8039B
GCA_030233985.1ContigJASPCT000000000SAMN35153901
UMB8039A.1
GCA_030233845.1ContigJASPCA000000000SAMN35153920
UMB3161-CI310P
GCA_030217645.1ContigJASOOI000000000SAMN34996502
UMB1218A
GCA_030218365.1ContigJASOPO000000000SAMN34996467
UMB0929
GCA_030216335.1ContigJASOKW000000000SAMN34996594
UMB8037
GCA_030216305.1ContigJASOKT000000000SAMN34996597
UMB8043
GCA_030215125.1ContigJASOLH000000000SAMN34996583
UMB7836
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UMB7855
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UMB8705
GCA_030214275.1ContigJASOHT000000000SAMN34996675
UMB8968
GCA_030214105.1ContigJASOHK000000000SAMN34996684
UMB9078
GCA_030212965.1ContigJASOFF000000000SAMN34996741
UMB9350
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UMB9819A
GCA_030233855.1ContigJASPCF000000000SAMN35153915
UMB10119A.1
GCA_030227525.1ContigJASOZT000000000SAMN35153979
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UMB10452
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GCA_030216465.1ContigJASOLU000000000SAMN34996570
UMB7533
GCA_030215145.1ContigJASOLI000000000SAMN34996582
UMB7834
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UMB8487
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UMB8623
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UMB9870
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UMB9774A
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UMB9597A
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UMB9335
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UMB9252
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UMB9988
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UMB10049
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UMB10061
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UMB9107
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UMB8626
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UMB8704A
GCA_030213065.1ContigJASOFK000000000SAMN34996736
UMB9337
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UMB9874A
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UMB0204B
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UMB0204A
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UMB0204C
GCA_030222455.1ContigJASOSF000000000SAMN34998835
UMB5838
GCA_030223505.1ContigJASOSJ000000000SAMN34998831
UMB4856B
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UMB7767-LJ435
GCA_030223255.1ContigJASORI000000000SAMN34996421
UMB10241A
GCA_030223305.1ContigJASORH000000000SAMN34996422
UMB10241B
GCA_030218415.1ContigJASOPT000000000SAMN34996462
UMB0776B
GCA_030219005.1ContigJASOQW000000000SAMN34996433
UMB0002
GCA_030216845.1ContigJASOMR000000000SAMN34996547
UMB6370
GCA_030216725.1ContigJASOMM000000000SAMN34996552
UMB6681
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UMB5641
GCA_030228295.1ContigJASPAO000000000SAMN35153958
UMB1218B.1
GCA_030230575.1ContigJASPDM000000000SAMN35153882
UMB1343A
GCA_030218925.1ContigJASOQQ000000000SAMN34996439
UMB0016
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UMB9902
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UMB1197
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UMB6791A
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GCA_030228265.1ContigJASOZZ000000000SAMN35153973
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GCA_030222245.1ContigJASORD000000000SAMN34996426
UMB12596
GCA_030212745.1ContigJASOEW000000000SAMN34996750
UMB9850
GCA_030225885.1ContigJASOWZ000000000SAMN34998710
UMB9975B
GCA_030230085.1ContigJASPCH000000000SAMN35153913
UMB9975A
GCA_030226245.1ContigJASOXP000000000SAMN34998694
UMB8248B
GCA_030214845.1ContigJASOKB000000000SAMN34996615
UMB8248A
GCA_030222355.1ContigJASORQ000000000SAMN34998850
UMB9555A
GCA_030222325.1ContigJASORP000000000SAMN34998851
UMB9555B
GCA_030218045.2ScaffoldJASOOY000000000SAMN34996483
UMB1064
GCA_030230685.1ContigJASPEH000000000SAMN35153858
UMB8929.1
GCA_030230115.1ContigJASPCI000000000SAMN35153912
UMB9351A
GCA_030218665.1ContigJASOQF000000000SAMN34996450
UMB0042B
GCA_030218005.1ContigJASOOZ000000000SAMN34996482
UMB1063
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UMB1299
GCA_030217265.1ContigJASONL000000000SAMN34996527
UMB3106
GCA_030216785.1ContigJASOMP000000000SAMN34996549
UMB6494
GCA_030213105.1ContigJASOFM000000000SAMN34996734
UMB9333
GCA_030213285.1ContigJASOFV000000000SAMN34996725
UMB9281
GCA_030215225.1ContigJASOLN000000000SAMN34996577
UMB7769
GCA_030227025.1ContigJASOZH000000000SAMN34998648
UMB10308
GCA_030213485.1ContigJASOGK000000000SAMN34996710
UMB9229
GCA_030211955.1ContigJASODI000000000SAMN34996790
UMB10118
GCA_030233875.1ContigJASPCB000000000SAMN35153919
UMB3161-CI310P
GCA_030227965.1ContigJASPAI000000000SAMN35153964
UMB3161B.1
GCA_030230455.1ContigJASPDL000000000SAMN35153883
UMB3161A
GCA_030217185.1ContigJASONJ000000000SAMN34996529
UMB3152
GCA_030217835.1ContigJASOOO000000000SAMN34996495
UMB1191
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UMB7856-SM462G
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UMB10230B.1
GCA_030227545.1ContigJASOZS000000000SAMN35153980
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UMB6720C
GCA_030224585.1ContigJASOUN000000000SAMN34998774
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UMB6746
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UMB9859
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UMB8091
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UMB11010
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UMB0019A
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UMB0036B
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UMB0020C
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UMB11527
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UMB12398
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UMB0036C
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UMB1111A
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UMB0046.A
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UMB0036A
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UMB6751
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UMB2328
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GCA_030226275.1ContigJASOXQ000000000SAMN34998693
UMB7973B
GCA_030228165.1ContigJASPBL000000000SAMN35153935
UMB7974B
GCA_030216405.1ContigJASOLC000000000SAMN34996588
UMB7974A
GCA_030215065.1ContigJASOLD000000000SAMN34996587
UMB7973A
GCA_030218065.1ContigJASOPA000000000SAMN34996481
UMB1050
GCA_030229965.1ContigJASPBW000000000SAMN35153924
UMB4589-SAG329G
GCA_030215415.1ContigJASOMA000000000SAMN34996564
UMB6521
GCA_030211635.1ContigJASOCU000000000SAMN34996804
UMB10505
GCA_030226685.1ContigJASOYK000000000SAMN34998671
UMB4589-SE434
GCA_030226665.1ContigJASOYM000000000SAMN34998669
UMB7766-LJ446
GCA_030218865.1ContigJASOQO000000000SAMN34996441
UMB0018B
GCA_030218905.1ContigJASOQR000000000SAMN34996438
UMB0895
GCA_030212035.1ContigJASODH000000000SAMN34996791
UMB10120
GCA_030217965.1ContigJASOOV000000000SAMN34996488
UMB1177
GCA_030217535.1ContigJASOOB000000000SAMN34996509
UMB1235
GCA_030217285.1ContigJASONN000000000SAMN34996525
UMB3104
GCA_030216865.1ContigJASOMS000000000SAMN34996546
UMB6358
GCA_030214965.1ContigJASOKU000000000SAMN34996596
UMB8040A
GCA_030212665.1ContigJASOER000000000SAMN34996755
UMB9872
GCA_030228525.1ContigJASOZX000000000SAMN35153975
UMB10230B.3
GCA_030219225.1ContigJASORN000000000SAMN34998853
UMB9796B
GCA_030219205.1ContigJASORO000000000SAMN34998852
UMB9796A
GCA_030219285.1ContigJASOSC000000000SAMN34998838
UMB0065A
GCA_030223385.1ContigJASOSB000000000SAMN34998839
UMB0065B
GCA_030223985.1ContigJASOTK000000000SAMN34998803
UMB10226B
GCA_030223965.1ContigJASOTL000000000SAMN34998802
UMB10226A
GCA_030227505.1ContigJASOZU000000000SAMN35153978
UMB12087A.3
GCA_030227625.1ContigJASPAA000000000SAMN35153972
UMB10161.2
GCA_030228605.1ContigJASOZY000000000SAMN35153974
UMB10230B.2
GCA_030223765.1ContigJASOSZ000000000SAMN34998815
UMB12383A
GCA_030223725.1ContigJASOSY000000000SAMN34998816
UMB12383B
GCA_030227555.1ContigJASPAB000000000SAMN35153971
UMB10161.3
GCA_030219105.2ScaffoldJASORG000000000SAMN34996423
UMB10562
GCA_030223945.1ContigJASOTJ000000000SAMN34998805
UMB10437
GCA_030223785.1ContigJASOTB000000000SAMN34998813
UMB11620B
GCA_030223845.1ContigJASOTC000000000SAMN34998812
UMB11620A
GCA_030228405.1ContigJASPAQ000000000SAMN35153956
UMB1190B
GCA_030230185.1ContigJASPDA000000000SAMN35153894
UMB7785A
GCA_030230265.1ContigJASPCP000000000SAMN35153905
UMB8606.2
GCA_030224165.1ContigJASOTR000000000SAMN34998796
UMB8379B
GCA_030224775.1ContigJASOUY000000000SAMN34998763
UMB1334B
GCA_030224905.1ContigJASOVE000000000SAMN34998757
UMB1204C
GCA_030224465.1ContigJASOUI000000000SAMN34998779
UMB7482B
GCA_030211655.1ContigJASOCT000000000SAMN34996805
UMB10235
GCA_030214665.1ContigJASOIN000000000SAMN34996655
UMB8622
GCA_030214725.1ContigJASOJG000000000SAMN34996636
UMB8379A
GCA_030215525.1ContigJASOIT000000000SAMN34996649
UMB8605
GCA_030215305.1ContigJASOLV000000000SAMN34996569
UMB7482A
GCA_030216085.1ContigJASOKC000000000SAMN34996614
UMB8243
GCA_030215565.1ContigJASOIU000000000SAMN34996648
UMB8604
GCA_030217785.1ContigJASOOJ000000000SAMN34996501
UMB1204B
GCA_030223905.1ContigJASOTF000000000SAMN34998809
UMB11008A
GCA_030223825.1ContigJASOTE000000000SAMN34998810
UMB11008B
GCA_030223865.1ContigJASOTD000000000SAMN34998811
UMB11141A
GCA_030214405.2ContigJASOHZ000000000SAMN34996669
UMB1286
GCA_030216795.1ContigJASOMO000000000SAMN34996550
UMB6496
GCA_030212305.1ContigJASODW000000000SAMN34996776
UMB9978
GCA_030214305.1ContigJASOHV000000000SAMN34996673
UMB8925
GCA_030216185.1ContigJASOKJ000000000SAMN34996607
UMB8098
GCA_030224345.1ContigJASOUC000000000SAMN34998785
UMB7777B
GCA_030227665.1ContigJASPAW000000000SAMN35153950
UMB1046C
GCA_030228695.1ContigJASOZA000000000SAMN34998655
UMB4614-CU331R
GCA_030223405.1ContigJASOSG000000000SAMN34998834
UMB5281
GCA_030223465.1ContigJASOSI000000000SAMN34998832
UMB5199
GCA_030223365.1ContigJASOSE000000000SAMN34998836
UMB0589
GCA_030219075.1ContigJASOQZ000000000SAMN34996430
UMB8972
GCA_030222275.1ContigJASORC000000000SAMN34996427
UMB12739
GCA_030223665.1ContigJASOSW000000000SAMN34998818
UMB0191A
GCA_030223695.1ContigJASOSV000000000SAMN34998819
UMB0191B
GCA_030226785.1ContigJASOYQ000000000SAMN34998665
UMB7805-LC452B
GCA_030226645.1ContigJASOYL000000000SAMN34998670
UMB7784-LJ451B
GCA_030228485.1ContigJASPAV000000000SAMN35153951
UMB1046C
GCA_030230905.1ContigJASPEB000000000SAMN35153865
UMB0036A
GCA_030230965.1ContigJASPDZ000000000SAMN35153867
UMB0046.B
GCA_030230065.1ContigJASPCM000000000SAMN35153908
UMB8702
GCA_030224955.1ContigJASOVJ000000000SAMN34998752
UMB1070
GCA_030224995.1ContigJASOVM000000000SAMN34998749
UMB0984
GCA_030218305.1ContigJASOPN000000000SAMN34996468
UMB0930
GCA_030217085.1ContigJASONG000000000SAMN34996532
UMB3159
GCA_030213245.1ContigJASOFT000000000SAMN34996727
UMB9289
GCA_030230485.1ContigJASPDF000000000SAMN35153889
UMB6688.2
GCA_030218245.1ContigJASOPJ000000000SAMN34996472
UMB1017
GCA_030217915.1ContigJASOOT000000000SAMN34996490
UMB1181
GCA_030212385.1ContigJASOEC000000000SAMN34996770
UMB9967
GCA_030230025.1ContigJASPBV000000000SAMN35153925
UMB3102-SG298
GCA_030218285.1ContigJASOPL000000000SAMN34996470
UMB0988A
GCA_030225005.1ContigJASOVK000000000SAMN34998751
UMB0988B
GCA_030225165.1ContigJASOVT000000000SAMN34998742
UMB0723
GCA_030224335.1ContigJASOUD000000000SAMN34998784
UMB7765
GCA_030224645.1ContigJASOUR000000000SAMN34998770
UMB3157
GCA_030224625.1ContigJASOUS000000000SAMN34998769
UMB3156B
GCA_030224565.1ContigJASOUO000000000SAMN34998773
UMB6899
GCA_030216685.1ContigJASOMJ000000000SAMN34996555
UMB6731
GCA_030214925.1ContigJASOKL000000000SAMN34996605
UMB8077
GCA_030229935.1ContigJASPBT000000000SAMN35153927
UMB3102-SG298
GCA_030227685.1ContigJASPAM000000000SAMN35153960
UMB1308B.2
GCA_030227845.1ContigJASPAG000000000SAMN35153966
UMB3164B.1
GCA_030227675.1ContigJASPAX000000000SAMN35153949
UMB0053B
GCA_030226285.1ContigJASOXS000000000SAMN34998691
UMB7781
GCA_030225195.1ContigJASOVO000000000SAMN34998747
UMB0894
GCA_030225265.1ContigJASOVW000000000SAMN34998739
UMB0025
GCA_030234055.1ContigJASPCW000000000SAMN35153898
UMB7933
GCA_030217945.1ContigJASOOU000000000SAMN34996489
UMB1179
GCA_030230165.1ContigJASPCN000000000SAMN35153907
UMB8702
GCA_030218155.1ContigJASOPF000000000SAMN34996476
UMB1024
GCA_030225055.1ContigJASOVH000000000SAMN34998754
UMB1176
GCA_030217525.1ContigJASONZ000000000SAMN34996511
UMB1296C
GCA_030217885.1ContigJASOOR000000000SAMN34996492
UMB1187A
GCA_030212975.1ContigJASOFG000000000SAMN34996740
UMB9348
GCA_030225045.1ContigJASOVG000000000SAMN34998755
UMB1187B
GCA_030224835.1ContigJASOVA000000000SAMN34998761
UMB1283
GCA_030228685.1ContigJASOZB000000000SAMN34998654
UMB10323
GCA_030230405.1ContigJASPCX000000000SAMN35153897
UMB7933
GCA_030225285.1ContigJASOVY000000000SAMN34998737
UMB0011
GCA_030228425.1ContigJASPAS000000000SAMN35153954
UMB1112B.2
GCA_030218345.1ContigJASOPP000000000SAMN34996466
UMB0889A
GCA_030216885.1ContigJASOMV000000000SAMN34996543
UMB5813
GCA_030225095.1ContigJASOVQ000000000SAMN34998745
UMB0800
GCA_030227985.1ContigJASPAT000000000SAMN35153953
UMB1112B.3
GCA_030226725.1ContigJASOYP000000000SAMN34998666
UMB7805-LG378
GCA_030224025.1ContigJASOTM000000000SAMN34998801
UMB10092B
GCA_030218885.1ContigJASOQP000000000SAMN34996440
UMB0017A
GCA_030227725.1ContigJASPBA000000000SAMN35153946
UMB0053C
GCA_030228345.1ContigJASPBB000000000SAMN35153945
UMB0030B
GCA_030225305.1ContigJASOVX000000000SAMN34998738
UMB0017B
GCA_030225245.1ContigJASOVV000000000SAMN34998740
UMB0026
GCA_030226705.1ContigJASOYO000000000SAMN34998667
UMB6735-LI436BR
GCA_030230925.1ContigJASPEA000000000SAMN35153866
UMB0046.C
GCA_030224675.2ScaffoldJASOUQ000000000SAMN34998771
UMB5578
GCA_030225105.1ContigJASOVR000000000SAMN34998744
UMB0767D
GCA_030224735.1ContigJASOUX000000000SAMN34998764
UMB1343B
GCA_030218385.1ContigJASOPQ000000000SAMN34996465
UMB0866
GCA_030218295.1ContigJASOPM000000000SAMN34996469
UMB0985
GCA_030218095.1ContigJASOPE000000000SAMN34996477
UMB1026
GCA_030218085.1ContigJASOPC000000000SAMN34996479
UMB1047
GCA_030216745.1ContigJASOMN000000000SAMN34996551
UMB6562
GCA_030217005.1ContigJASONA000000000SAMN34996538
UMB5612
GCA_030216985.1ContigJASOMZ000000000SAMN34996539
UMB5613
GCA_030217095.1ContigJASOND000000000SAMN34996535
UMB4589
GCA_030216375.1ContigJASOLB000000000SAMN34996589
UMB7975
GCA_030217445.1ContigJASONV000000000SAMN34996517
UMB1340
GCA_030217315.1ContigJASONQ000000000SAMN34996522
UMB0799
GCA_030215465.1ContigJASOIH000000000SAMN34996661
UMB8703
GCA_030215865.1ContigJASOJL000000000SAMN34996631
UMB8370
GCA_030215705.1ContigJASOJC000000000SAMN34996640
UMB8455
GCA_030213385.1ContigJASOGA000000000SAMN34996720
UMB9258
GCA_030213445.1ContigJASOGD000000000SAMN34996717
UMB9251
GCA_030214175.1ContigJASOHN000000000SAMN34996681
UMB9070
GCA_030214465.1ContigJASOIE000000000SAMN34996664
UMB8706A
GCA_030213805.1ContigJASOHE000000000SAMN34996690
UMB9106
GCA_030212335.1ContigJASOEB000000000SAMN34996771
UMB9968
GCA_030212275.1ContigJASODX000000000SAMN34996775
UMB9977
GCA_030212235.1ContigJASODV000000000SAMN34996777
UMB9979
GCA_030211825.1ContigJASODD000000000SAMN34996795
UMB10181
GCA_030233755.1ContigJASPBX000000000SAMN35153923
UMB4589-SAG329G
GCA_030230745.1ContigJASPDX000000000SAMN35153869
UMB0767C
GCA_030230565.1ContigJASPDN000000000SAMN35153881
UMB1343A
GCA_030228145.1ContigJASPBM000000000SAMN35153934
UMB7974B
GCA_030215825.1ContigJASOJK000000000SAMN34996632
UMB8371
GCA_030226005.1ContigJASOXC000000000SAMN34998707
UMB9934
GCA_030217155.1ContigJASONF000000000SAMN34996533
UMB0829
GCA_030216805.1ContigJASOMQ000000000SAMN34996548
UMB0952
GCA_030214475.1ContigJASOIB000000000SAMN34996667
UMB8832
GCA_030218815.1ContigJASOQL000000000SAMN34996444
UMB0029B
GCA_030226375.1ContigJASOXW000000000SAMN34998687
UMB1896B
GCA_030218585.1ContigJASOQA000000000SAMN34996455
UMB0611
GCA_030218565.1ContigJASOPZ000000000SAMN34996456
UMB0612
GCA_030217035.1ContigJASONB000000000SAMN34996537
UMB5340
GCA_030217345.1ContigJASONP000000000SAMN34996523
UMB1896A
GCA_030226345.1ContigJASOXV000000000SAMN34998688
UMB3103
GCA_030214605.1ContigJASOIL000000000SAMN34996657
UMB8624A
GCA_030218465.1ContigJASOPU000000000SAMN34996461
UMB0765
GCA_030228225.1ContigJASPBU000000000SAMN35153926
UMB3102-SG298
GCA_030217725.1ContigJASOOK000000000SAMN34996500
UMB1203
GCA_030233945.1ContigJASPDH000000000SAMN35153887
UMB5615A
GCA_030228465.1ContigJASPBQ000000000SAMN35153930
UMB5615B
GCA_030230625.1ContigJASPDQ000000000SAMN35153876
UMB1304A
GCA_030228245.1ContigJASOZV000000000SAMN35153977
UMB10230B.4
GCA_030219125.1ContigJASORJ000000000SAMN34996420
UMB10101
GCA_030223885.1ContigJASOTG000000000SAMN34998808
UMB10444
GCA_030219265.1ContigJASORR000000000SAMN34998849
UMB8664
GCA_030223545.1ContigJASOSN000000000SAMN34998827
UMB2443
GCA_030226145.1ContigJASOXK000000000SAMN34998699
UMB9073
GCA_030225145.1ContigJASOVP000000000SAMN34998746
UMB0889B
GCA_030211985.1ContigJASODJ000000000SAMN34996789
UMB10116
GCA_030231005.1ContigJASPEJ000000000SAMN35153856
UMB1096A
GCA_030217895.1ContigJASOOS000000000SAMN34996491
UMB1185
GCA_030217505.1ContigJASOOA000000000SAMN34996510
UMB1295B
GCA_030217205.1ContigJASONM000000000SAMN34996526
UMB3105
GCA_030217145.1ContigJASONH000000000SAMN34996531
UMB3158
GCA_030230145.1ContigJASPDI000000000SAMN35153886
UMB3164A
GCA_030227645.1ContigJASPAF000000000SAMN35153967
UMB3164B.2
GCA_030234115.1ContigJASPEL000000000SAMN35153854
UMB6473-AN360BR
GCA_030225665.1ContigJASOZN000000000SAMN35153985
UMB750A.2
GCA_030225685.1ContigJASOZL000000000SAMN35153987
UMB750B.2
SRA Data Details
ParameterValue
Data volume, Gbases564
Data volume, Tbytes0.20

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