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Accession: PRJNA855638 ID: 855638

seawater metagenome

Prokaryotes and viruses from sea-surface microlayer of a brackish surface slick

In this study, we investigated the bacterial and viral community from samples of sea-surface microlayer sampled inside and outside a natural surface slick in the Baltic Sea by sequencing metagenomes from larger than 5 um and 5-0.2 um filtered fraction and the small than 0.2 um viral fraction.
AccessionPRJNA855638
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismseawater metagenome[Taxonomy ID: 1561972]
unclassified sequences; metagenomes; ecological metagenomes; seawater metagenome
Publications
  • Published online: Rahlff J et al., "Ecogenomics and cultivation reveal distinctive viral-bacterial communities in the surface microlayer of a Baltic Sea slick", ISME Communications, 2023;3(1)
Grants
  • "Exploring the virioneuston: Viral-bacterial interactions between ocean and atmosphere (VIBOCAT)" (Grant ID RA3432/1-1, German Research Foundation)
SubmissionRegistration date: 14-Aug-2023
Linnaeus University
Related Resources
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)325
SRA Experiments12
Other datasets
BioSample337
Assembly325
Assembly details:
Assembly levelNumber of Assemblies
324
1
325
AssemblyLevelWGSBioSampleInfraspecies IdTaxonomy
GCA_030728355.1ScaffoldJANQZW000000000SAMN29881410
MAG_175
GCA_030727725.1ScaffoldJANRBB000000000SAMN29881441
MAG_206
GCA_030727185.1ScaffoldJANRCE000000000SAMN29881470
MAG_235
GCA_030726485.1ScaffoldJANRDR000000000SAMN29881509
MAG_274
GCA_030725745.1ScaffoldJANRFH000000000SAMN29881551
MAG_316
GCA_030730375.1ScaffoldJANQVL000000000SAMN29881295
MAG_60
GCA_030729145.1ScaffoldJANQXY000000000SAMN29881360
MAG_125
GCA_030728605.1ScaffoldJANQZE000000000SAMN29881392
MAG_157
GCA_030726335.1ScaffoldJANREB000000000SAMN29881519
MAG_284
GCA_030727565.1ScaffoldJANRBH000000000SAMN29881447
MAG_212
GCA_030728285.1ScaffoldJANQZV000000000SAMN29881409
MAG_174
GCA_030729025.1ScaffoldJANQYG000000000SAMN29881368
MAG_133
GCA_030729785.1ScaffoldJANQWS000000000SAMN29881328
MAG_93
GCA_030731325.1ScaffoldJANQUD000000000SAMN29881261
MAG_26
GCA_030731815.1ScaffoldJANQTE000000000SAMN29881236
MAG_01
GCA_030729745.1ScaffoldJANQWT000000000SAMN29881329
MAG_94
GCA_030730145.1ScaffoldJANQVW000000000SAMN29881306
MAG_71
GCA_030737935.1ScaffoldJAPJEA000000000SAMN31710614
SMS8
GCA_030731905.1ScaffoldJAPJED000000000SAMN31710617
SMS9
GCA_030730215.1ScaffoldJANQVV000000000SAMN29881305
MAG_70
GCA_030729365.1ScaffoldJANQXQ000000000SAMN29881352
MAG_117
GCA_030728575.1ScaffoldJANQZG000000000SAMN29881394
MAG_159
GCA_030727845.1ScaffoldJANRAV000000000SAMN29881435
MAG_200
GCA_030727085.1ScaffoldJANRCF000000000SAMN29881471
MAG_236
GCA_030726585.1ScaffoldJANRDK000000000SAMN29881502
MAG_267
GCA_030728905.1ScaffoldJANQYQ000000000SAMN29881378
MAG_143
GCA_030730525.1ScaffoldJANQUY000000000SAMN29881282
MAG_47
GCA_030727345.1ScaffoldJANRBU000000000SAMN29881460
MAG_225
GCA_030731845.1ScaffoldJANQTF000000000SAMN29881237
MAG_02
GCA_030725805.1ScaffoldJANREW000000000SAMN29881540
MAG_305
GCA_030731205.1ScaffoldJANQUI000000000SAMN29881266
MAG_31
GCA_030731305.1ScaffoldJANQUH000000000SAMN29881265
MAG_30
GCA_030731225.1ScaffoldJANQUJ000000000SAMN29881267
MAG_32
GCA_030730345.1ScaffoldJANQVM000000000SAMN29881296
MAG_61
GCA_030730155.1ScaffoldJANQVX000000000SAMN29881307
MAG_72
GCA_030728985.1ScaffoldJANQYI000000000SAMN29881370
MAG_135
GCA_030728945.1ScaffoldJANQYJ000000000SAMN29881371
MAG_136
GCA_030729685.1ScaffoldJANQWX000000000SAMN29881333
MAG_98
GCA_030729625.1ScaffoldJANQWY000000000SAMN29881334
MAG_99
GCA_030729605.1ScaffoldJANQWZ000000000SAMN29881335
MAG_100
GCA_030727525.1ScaffoldJANRBK000000000SAMN29881450
MAG_215
GCA_030728345.1ScaffoldJANRAB000000000SAMN29881415
MAG_180
GCA_030728115.1ScaffoldJANRAE000000000SAMN29881418
MAG_183
GCA_030728105.1ScaffoldJANRAF000000000SAMN29881419
MAG_184
GCA_030728185.1ScaffoldJANRAC000000000SAMN29881416
MAG_181
GCA_030726825.1ScaffoldJANRCV000000000SAMN29881487
MAG_252
GCA_030726765.1ScaffoldJANRCX000000000SAMN29881489
MAG_254
GCA_030726775.1ScaffoldJANRCW000000000SAMN29881488
MAG_253
GCA_030726855.1ScaffoldJANRCU000000000SAMN29881486
MAG_251
GCA_030726195.1ScaffoldJANREF000000000SAMN29881523
MAG_288
GCA_030726145.1ScaffoldJANREH000000000SAMN29881525
MAG_290
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MAG_289
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MAG_291
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MAG_182
GCA_030730595.1ScaffoldJANQUU000000000SAMN29881278
MAG_43
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MAG_151
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MAG_56
GCA_030729285.1ScaffoldJANQXT000000000SAMN29881355
MAG_120
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MAG_106
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MAG_92
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MAG_89
GCA_030729035.1ScaffoldJANQYE000000000SAMN29881366
MAG_131
GCA_030730625.1ScaffoldJANQUQ000000000SAMN29881274
MAG_39
GCA_030731425.1ScaffoldJANQUB000000000SAMN29881259
MAG_24
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MAG_20
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MAG_173
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MAG_130
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MAG_230
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MAG_278
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MAG_260
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MAG_69
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MAG_03
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MAG_41
GCA_030731725.1ScaffoldJANQTM000000000SAMN29881244
MAG_09
GCA_030731365.1ScaffoldJANQUE000000000SAMN29881262
MAG_27
GCA_030730695.1ScaffoldJANQUP000000000SAMN29881273
MAG_38
GCA_030730025.1ScaffoldJANQWC000000000SAMN29881312
MAG_77
GCA_030730005.1ScaffoldJANQWB000000000SAMN29881311
MAG_76
GCA_030728805.1ScaffoldJANQYN000000000SAMN29881375
MAG_140
GCA_030729515.1ScaffoldJANQXE000000000SAMN29881340
MAG_105
GCA_030726755.1ScaffoldJANRDA000000000SAMN29881492
MAG_257
GCA_030727015.1ScaffoldJANRCJ000000000SAMN29881475
MAG_240
GCA_030727105.1ScaffoldJANRCI000000000SAMN29881474
MAG_239
GCA_030726025.1ScaffoldJANREO000000000SAMN29881532
MAG_297
GCA_030727425.1ScaffoldJANRBP000000000SAMN29881455
MAG_220
GCA_030727405.1ScaffoldJANRBR000000000SAMN29881457
MAG_222
GCA_030728465.1ScaffoldJANQZK000000000SAMN29881398
MAG_163
GCA_030728505.1ScaffoldJANQZJ000000000SAMN29881397
MAG_162
GCA_030728135.1ScaffoldJANRAH000000000SAMN29881421
MAG_186
GCA_030727985.1ScaffoldJANRAL000000000SAMN29881425
MAG_190
GCA_030731785.1ScaffoldJANQTH000000000SAMN29881239
MAG_04
GCA_030729565.1ScaffoldJANQXB000000000SAMN29881337
MAG_102
GCA_030728955.1ScaffoldJANQYK000000000SAMN29881372
MAG_137
GCA_030728565.1ScaffoldJANQZH000000000SAMN29881395
MAG_160
GCA_030728065.1ScaffoldJANRAG000000000SAMN29881420
MAG_185
GCA_030727465.1ScaffoldJANRBL000000000SAMN29881451
MAG_216
GCA_030727125.1ScaffoldJANRCG000000000SAMN29881472
MAG_237
GCA_030726745.1ScaffoldJANRCY000000000SAMN29881490
MAG_255
GCA_030726905.1ScaffoldJANRCZ000000000SAMN29881491
MAG_256
GCA_030728825.1ScaffoldJANQYU000000000SAMN29881382
MAG_147
GCA_030727115.1ScaffoldJANRCH000000000SAMN29881473
MAG_238
GCA_030728525.1ScaffoldJANQZI000000000SAMN29881396
MAG_161
GCA_030758515.1ScaffoldJANQVZ000000000SAMN29881309
MAG_74
GCA_030730045.1ScaffoldJANQWE000000000SAMN29881314
MAG_79
GCA_030725865.1ScaffoldJANREV000000000SAMN29881539
MAG_304
GCA_030731635.1ScaffoldJANQTR000000000SAMN29881249
MAG_14
GCA_030731745.1ScaffoldJANQTJ000000000SAMN29881241
MAG_06
GCA_030731245.1ScaffoldJANQUN000000000SAMN29881271
MAG_36
GCA_030730675.1ScaffoldJANQUO000000000SAMN29881272
MAG_37
GCA_030728925.1ScaffoldJANQYM000000000SAMN29881374
MAG_139
GCA_030729575.1ScaffoldJANQXC000000000SAMN29881338
MAG_103
GCA_030726005.1ScaffoldJANREN000000000SAMN29881531
MAG_296
GCA_030726725.1ScaffoldJANRDC000000000SAMN29881494
MAG_259
GCA_030726675.1ScaffoldJANRDB000000000SAMN29881493
MAG_258
GCA_030728035.1ScaffoldJANRAJ000000000SAMN29881423
MAG_188
GCA_030728005.1ScaffoldJANRAK000000000SAMN29881424
MAG_189
GCA_030727415.1ScaffoldJANRBQ000000000SAMN29881456
MAG_221
GCA_030727485.1ScaffoldJANRBO000000000SAMN29881454
MAG_219
GCA_030727585.1ScaffoldJANRBJ000000000SAMN29881449
MAG_214
GCA_030728205.1ScaffoldJANQZZ000000000SAMN29881413
MAG_178
GCA_030728235.1ScaffoldJANRAA000000000SAMN29881414
MAG_179
GCA_030726845.1ScaffoldJANRCT000000000SAMN29881485
MAG_250
GCA_030726175.1ScaffoldJANREE000000000SAMN29881522
MAG_287
GCA_030726165.1ScaffoldJANRED000000000SAMN29881521
MAG_286
GCA_030729665.1ScaffoldJANQWW000000000SAMN29881332
MAG_97
GCA_030729695.1ScaffoldJANQWV000000000SAMN29881331
MAG_96
GCA_030731375.1ScaffoldJANQUG000000000SAMN29881264
MAG_29
GCA_030730305.1ScaffoldJANQVO000000000SAMN29881298
MAG_63
GCA_030730085.1ScaffoldJANQWA000000000SAMN29881310
MAG_75
GCA_030731735.1ScaffoldJANQTL000000000SAMN29881243
MAG_08
GCA_030726375.1ScaffoldJANREA000000000SAMN29881518
MAG_283
GCA_030727895.1ScaffoldJANRAQ000000000SAMN29881430
MAG_195
GCA_030728735.1ScaffoldJANQYR000000000SAMN29881379
MAG_144
GCA_030730105.1ScaffoldJANQVY000000000SAMN29881308
MAG_73
GCA_030728025.1ScaffoldJANRAO000000000SAMN29881428
MAG_193
GCA_030726665.1ScaffoldJANRDG000000000SAMN29881498
MAG_263
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MAG_44
GCA_030729465.1ScaffoldJANQXI000000000SAMN29881344
MAG_109
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MAG_292
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MAG_276
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MAG_279
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MAG_277
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MAG_245
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MAG_246
GCA_030727045.1ScaffoldJANRCN000000000SAMN29881479
MAG_244
GCA_030728385.1ScaffoldJANQZR000000000SAMN29881405
MAG_170
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MAG_209
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MAG_210
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MAG_207
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MAG_87
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MAG_88
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MAG_90
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MAG_169
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MAG_128
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MAG_132
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MAG_127
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MAG_126
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MAG_25
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MAG_22
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MAG_21
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MAG_19
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MAG_45
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MAG_224
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MAG_194
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MAG_301
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MAG_110
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MAG_141
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MAG_40
GCA_030758155.1ScaffoldJANRDE000000000SAMN29881496
MAG_261
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MAG_299
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MAG_107
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MAG_191
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MAG_223
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MAG_46
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MAG_49
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MAG_78
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MAG_302
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MAG_111
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MAG_10
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MAG_11
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MAG_48
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MAG_112
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MAG_50
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MAG_64
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MAG_264
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MAG_226
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MAG_234
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MAG_205
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MAG_196
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MAG_156
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MAG_265
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MAG_273
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MAG_227
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MAG_303
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MAG_315
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MAG_68
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MAG_86
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MAG_124
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MAG_228
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MAG_197
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MAG_82
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MAG_146
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MAG_164
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MAG_12
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MAG_65
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MAG_80
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MAG_217
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MAG_62
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MAG_13
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MAG_07
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MAG_294
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MAG_172
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MAG_280
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MAG_247
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MAG_23
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MAG_129
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MAG_91
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MAG_268
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MAG_199
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MAG_229
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MAG_149
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MAG_54
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MAG_67
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MAG_34
GCA_030732015.1ScaffoldJAPJDX000000000SAMN31710611
SMS2
GCA_030730235.1ScaffoldJANQVR000000000SAMN29881301
MAG_66
GCA_030727955.1ScaffoldJANRAN000000000SAMN29881427
MAG_192
GCA_030725965.1ScaffoldJANRER000000000SAMN29881535
MAG_300
GCA_030726645.1ScaffoldJANRDF000000000SAMN29881497
MAG_262
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MAG_42
GCA_030728785.1ScaffoldJANQYP000000000SAMN29881377
MAG_142
GCA_030729505.1ScaffoldJANQXH000000000SAMN29881343
MAG_108
GCA_030734085.1ScaffoldJANQZF000000000SAMN29881393
MAG_158
GCA_030731985.1ScaffoldJAPJDY000000000SAMN31710612
SMS3
GCA_030731965.1ScaffoldJAPJDZ000000000SAMN31710613
SMS4
GCA_030731935.1ScaffoldJAPJEB000000000SAMN31710615
SMS11
GCA_030731925.1ContigJAPJEC000000000SAMN31710616
SMS12
GCA_030727885.1ScaffoldJANRAT000000000SAMN29881433
MAG_198
GCA_030728485.1ScaffoldJANQZN000000000SAMN29881401
MAG_166
GCA_030727035.1ScaffoldJANRCK000000000SAMN29881476
MAG_241
GCA_030731585.1ScaffoldJANQTU000000000SAMN29881252
MAG_17
GCA_030731565.1ScaffoldJANQTT000000000SAMN29881251
MAG_16
GCA_030729915.1ScaffoldJANQWI000000000SAMN29881318
MAG_83
GCA_030730485.1ScaffoldJANQVE000000000SAMN29881288
MAG_53
GCA_030726865.1ScaffoldJANRCS000000000SAMN29881484
MAG_249
GCA_030726365.1ScaffoldJANREC000000000SAMN29881520
MAG_285
GCA_030728215.1ScaffoldJANQZY000000000SAMN29881412
MAG_177
GCA_030727625.1ScaffoldJANRBI000000000SAMN29881448
MAG_213
GCA_030729725.1ScaffoldJANQWU000000000SAMN29881330
MAG_95
GCA_030729005.1ScaffoldJANQYH000000000SAMN29881369
MAG_134
GCA_030728245.1ScaffoldJANQZX000000000SAMN29881411
MAG_176
GCA_030728445.1ScaffoldJANQZO000000000SAMN29881402
MAG_167
GCA_030728425.1ScaffoldJANQZP000000000SAMN29881403
MAG_168
GCA_030725825.1ScaffoldJANRFA000000000SAMN29881544
MAG_309
GCA_030727005.1ScaffoldJANRCL000000000SAMN29881477
MAG_242
GCA_030727165.1ScaffoldJANRCM000000000SAMN29881478
MAG_243
GCA_030731335.1ScaffoldJANQUF000000000SAMN29881263
MAG_28
GCA_030728765.1ScaffoldJANQYV000000000SAMN29881383
MAG_148
GCA_030729345.1ScaffoldJANQXP000000000SAMN29881351
MAG_116
GCA_030729925.1ScaffoldJANQWK000000000SAMN29881320
MAG_85
GCA_030729905.1ScaffoldJANQWJ000000000SAMN29881319
MAG_84
GCA_030725815.1ScaffoldJANRFD000000000SAMN29881547
MAG_312
GCA_030726035.1ScaffoldJANREM000000000SAMN29881530
MAG_295
GCA_030726275.1ScaffoldJANRDO000000000SAMN29881506
MAG_271
GCA_030726265.1ScaffoldJANRDP000000000SAMN29881507
MAG_272
GCA_030728075.1ScaffoldJANRAI000000000SAMN29881422
MAG_187
GCA_030727765.1ScaffoldJANRAY000000000SAMN29881438
MAG_203
GCA_030727805.1ScaffoldJANRAX000000000SAMN29881437
MAG_202
GCA_030727195.1ScaffoldJANRCB000000000SAMN29881467
MAG_232
GCA_030727265.1ScaffoldJANRCA000000000SAMN29881466
MAG_231
GCA_030727225.1ScaffoldJANRCC000000000SAMN29881468
MAG_233
GCA_030727495.1ScaffoldJANRBN000000000SAMN29881453
MAG_218
GCA_030725705.1ScaffoldJANRFE000000000SAMN29881548
MAG_313
GCA_030730405.1ScaffoldJANQVI000000000SAMN29881292
MAG_57
GCA_030729265.1ScaffoldJANQXU000000000SAMN29881356
MAG_121
GCA_030729245.1ScaffoldJANQXV000000000SAMN29881357
MAG_122
GCA_030729545.1ScaffoldJANQXD000000000SAMN29881339
MAG_104
GCA_030728705.1ScaffoldJANQYZ000000000SAMN29881387
MAG_152
GCA_030728665.1ScaffoldJANQZB000000000SAMN29881389
MAG_154
GCA_030728645.1ScaffoldJANQZA000000000SAMN29881388
MAG_153
GCA_030728835.1ScaffoldJANQYL000000000SAMN29881373
MAG_138
GCA_030731235.1ScaffoldJANQUK000000000SAMN29881268
MAG_33
GCA_030726065.1ScaffoldJANREK000000000SAMN29881528
MAG_293
GCA_030731885.1ScaffoldJAPJEE000000000SAMN31710618
ULN5
GCA_030730465.1ScaffoldJANQVG000000000SAMN29881290
MAG_55
GCA_030729325.1ScaffoldJANQXR000000000SAMN29881353
MAG_118
GCA_030726545.1ScaffoldJANRDM000000000SAMN29881504
MAG_269
GCA_030725785.1ScaffoldJANRFB000000000SAMN29881545
MAG_310
GCA_030727825.1ScaffoldJANRAW000000000SAMN29881436
MAG_201
GCA_030729295.1ScaffoldJANQXS000000000SAMN29881354
MAG_119
GCA_030728725.1ScaffoldJANQYX000000000SAMN29881385
MAG_150
GCA_030731805.1ScaffoldJANQTI000000000SAMN29881240
MAG_05
GCA_030731175.1ScaffoldJANQUM000000000SAMN29881270
MAG_35
GCA_030726225.1ScaffoldJANRDZ000000000SAMN29881517
MAG_282
GCA_030730365.1ScaffoldJANQVJ000000000SAMN29881293
MAG_58
GCA_030728655.1ScaffoldJANQZC000000000SAMN29881390
MAG_155
GCA_030729225.1ScaffoldJANQXW000000000SAMN29881358
MAG_123
GCA_030726465.1ScaffoldJANRDS000000000SAMN29881510
MAG_275
GCA_030727785.1ScaffoldJANRAZ000000000SAMN29881439
MAG_204
GCA_030725755.1ScaffoldJANRFF000000000SAMN29881549
MAG_314
GCA_030731525.1ScaffoldJANQTV000000000SAMN29881253
MAG_18
GCA_030731595.1ScaffoldJANQTS000000000SAMN29881250
MAG_15
GCA_030729645.1ScaffoldJANQXA000000000SAMN29881336
MAG_101
GCA_030719055.1ScaffoldJAPJDW000000000SAMN31653011
-
SRA Data Details
ParameterValue
Data volume, Gbases628
Data volume, Tbytes0.21

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