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Accession: PRJNA1013763 ID: 1013763

Recent emergence of a novel methicillin resistant Staphylococcus pseudintermedius strain and likely importation of another from Europe revealed by whole genome sequencing of Staphylococcus pseudintermedius from companion animals and humans in Scotlan

we assessed the genotypic diversity and antimicrobial susceptibility of S. pseudintermedius isolates from companion animals and humans, in a collection spanning a 14-year period, to assess the emergence and dissemination of novel MDR MRSP in animals and humans and changes in antimicrobial susceptibility
AccessionPRJNA1013763
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 7-Sep-2023
Veterinary Medicines Directorate
- Scottish Microbiology Reference Laboratories, Glasgow
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)74
Other datasets
BioSample130
Assembly74
Assembly details:
Assembly levelNumber of Assemblies
Contig Contig
Total
74
74
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_031854175.1ContigJAVSBJ000000000SAMN37310393
08-01
Staphylococcus pseudintermedius
GCA_031854135.1ContigJAVSBI000000000SAMN37310492
09-5511
Staphylococcus pseudintermedius
GCA_031854125.1ContigJAVSBH000000000SAMN37310399
10-03
Staphylococcus pseudintermedius
GCA_031854065.1ContigJAVSBE000000000SAMN37310407
11-03
Staphylococcus pseudintermedius
GCA_031854085.1ContigJAVSBG000000000SAMN37310403
10-08
Staphylococcus pseudintermedius
GCA_031854055.1ContigJAVSBF000000000SAMN37310405
11-01
Staphylococcus pseudintermedius
GCA_031854045.1ContigJAVSBD000000000SAMN37310410
14-01
Staphylococcus pseudintermedius
GCA_031854025.1ContigJAVSBC000000000SAMN37310415
14-06
Staphylococcus pseudintermedius
GCA_031854005.1ContigJAVSBB000000000SAMN37310417
14-08
Staphylococcus pseudintermedius
GCA_031853985.1ContigJAVSBA000000000SAMN37310419
15-01
Staphylococcus pseudintermedius
GCA_031853965.1ContigJAVSAY000000000SAMN37310497
15-3667
Staphylococcus pseudintermedius
GCA_031853945.1ContigJAVSAZ000000000SAMN37310496
15-1088
Staphylococcus pseudintermedius
GCA_031853925.1ContigJAVSAX000000000SAMN37310498
15-4050
Staphylococcus pseudintermedius
GCA_031853905.1ContigJAVSAW000000000SAMN37310424
16-01
Staphylococcus pseudintermedius
GCA_031853885.1ContigJAVSAU000000000SAMN37310427
16-06
Staphylococcus pseudintermedius
GCA_031853865.1ContigJAVSAT000000000SAMN37310499
16-0338
Staphylococcus pseudintermedius
GCA_031853845.1ContigJAVSAV000000000SAMN37310426
16-04
Staphylococcus pseudintermedius
GCA_031853825.1ContigJAVSAS000000000SAMN37310501
16-3767
Staphylococcus pseudintermedius
GCA_031853805.1ContigJAVSAR000000000SAMN37310503
16-4535
Staphylococcus pseudintermedius
GCA_031853785.1ContigJAVSAP000000000SAMN37310431
17-02
Staphylococcus pseudintermedius
GCA_031853765.1ContigJAVSAQ000000000SAMN37310430
17-01
Staphylococcus pseudintermedius
GCA_031853745.1ContigJAVSAO000000000SAMN37310432
17-03
Staphylococcus pseudintermedius
GCA_031853725.1ContigJAVSAN000000000SAMN37310434
17-07
Staphylococcus pseudintermedius
GCA_031853705.1ContigJAVSAM000000000SAMN37310435
17-08
Staphylococcus pseudintermedius
GCA_031853685.1ContigJAVSAH000000000SAMN37310445
17-22
Staphylococcus pseudintermedius
GCA_031853665.1ContigJAVSAL000000000SAMN37310436
17-09
Staphylococcus pseudintermedius
GCA_031853645.1ContigJAVSAK000000000SAMN37310440
17-16
Staphylococcus pseudintermedius
GCA_031853625.1ContigJAVSAJ000000000SAMN37310441
17-18
Staphylococcus pseudintermedius
GCA_031853595.1ContigJAVSAI000000000SAMN37310442
17-19
Staphylococcus pseudintermedius
GCA_031853585.1ContigJAVSAG000000000SAMN37310446
17-23
Staphylococcus pseudintermedius
GCA_031853565.1ContigJAVSAF000000000SAMN37310447
17-25
Staphylococcus pseudintermedius
GCA_031853545.1ContigJAVSAE000000000SAMN37310506
17-1948
Staphylococcus pseudintermedius
GCA_031853525.1ContigJAVSAD000000000SAMN37310509
17-2370
Staphylococcus pseudintermedius
GCA_031853495.1ContigJAVSAB000000000SAMN37310450
18-05
Staphylococcus pseudintermedius
GCA_031853485.1ContigJAVSAA000000000SAMN37310451
18-06
Staphylococcus pseudintermedius
GCA_031853465.1ContigJAVSAC000000000SAMN37310448
18-01
Staphylococcus pseudintermedius
GCA_031853445.1ContigJAVRZZ000000000SAMN37310453
18-08
Staphylococcus pseudintermedius
GCA_031853425.1ContigJAVRZY000000000SAMN37310456
18-11
Staphylococcus pseudintermedius
GCA_031853385.1ContigJAVRZW000000000SAMN37310459
18-14
Staphylococcus pseudintermedius
GCA_031853405.1ContigJAVRZX000000000SAMN37310457
18-12
Staphylococcus pseudintermedius
GCA_031853365.1ContigJAVRZV000000000SAMN37310513
18-4019
Staphylococcus pseudintermedius
GCA_031853345.1ContigJAVRZT000000000SAMN37310461
19-01
Staphylococcus pseudintermedius
GCA_031853325.1ContigJAVRZS000000000SAMN37310462
19-02
Staphylococcus pseudintermedius
GCA_031853305.1ContigJAVRZU000000000SAMN37310514
18-4340
Staphylococcus pseudintermedius
GCA_031853285.1ContigJAVRZR000000000SAMN37310463
19-03
Staphylococcus pseudintermedius
GCA_031853265.1ContigJAVRZQ000000000SAMN37310464
19-04
Staphylococcus pseudintermedius
GCA_031853245.1ContigJAVRZP000000000SAMN37310465
19-05
Staphylococcus pseudintermedius
GCA_031853225.1ContigJAVRZO000000000SAMN37310466
19-07
Staphylococcus pseudintermedius
GCA_031853205.1ContigJAVRZN000000000SAMN37310467
19-19
Staphylococcus pseudintermedius
GCA_031853185.1ContigJAVRZM000000000SAMN37310468
19-08
Staphylococcus pseudintermedius
GCA_031853165.1ContigJAVRZL000000000SAMN37310469
19-09
Staphylococcus pseudintermedius
GCA_031853125.1ContigJAVRZI000000000SAMN37310474
19-18
Staphylococcus pseudintermedius
GCA_031853145.1ContigJAVRZK000000000SAMN37310472
19-16
Staphylococcus pseudintermedius
GCA_031853105.1ContigJAVRZJ000000000SAMN37310473
19-17
Staphylococcus pseudintermedius
GCA_031853085.1ContigJAVSBK000000000SAMN37310517
19-1599
Staphylococcus pseudintermedius
GCA_031853065.1ContigJAVRZH000000000SAMN37310516
19-1556
Staphylococcus pseudintermedius
GCA_031853045.1ContigJAVRZG000000000SAMN37310519
19-2630
Staphylococcus pseudintermedius
GCA_031853025.1ContigJAVRZF000000000SAMN37310475
20-11
Staphylococcus pseudintermedius
GCA_031853005.1ContigJAVRZE000000000SAMN37310476
20-12
Staphylococcus pseudintermedius
GCA_031852985.1ContigJAVRZD000000000SAMN37310477
20-01
Staphylococcus pseudintermedius
GCA_031852965.1ContigJAVRZB000000000SAMN37310479
20-14
Staphylococcus pseudintermedius
GCA_031852945.1ContigJAVRZC000000000SAMN37310478
20-13
Staphylococcus pseudintermedius
GCA_031852925.1ContigJAVRZA000000000SAMN37310480
20-15
Staphylococcus pseudintermedius
GCA_031852905.1ContigJAVRYX000000000SAMN37310483
20-18
Staphylococcus pseudintermedius
GCA_031852875.1ContigJAVRYZ000000000SAMN37310481
20-16
Staphylococcus pseudintermedius
GCA_031852865.1ContigJAVRYY000000000SAMN37310482
20-17
Staphylococcus pseudintermedius
GCA_031852845.1ContigJAVRYW000000000SAMN37310484
20-19
Staphylococcus pseudintermedius
GCA_031852825.1ContigJAVRYV000000000SAMN37310487
20-04
Staphylococcus pseudintermedius
GCA_031852805.1ContigJAVRYU000000000SAMN37310488
20-05
Staphylococcus pseudintermedius
GCA_031852785.1ContigJAVRYT000000000SAMN37310489
20-06
Staphylococcus pseudintermedius
GCA_031852765.1ContigJAVRYP000000000SAMN37310522
20-1540
Staphylococcus pseudintermedius
GCA_031852745.1ContigJAVRYS000000000SAMN37310490
20-09
Staphylococcus pseudintermedius
GCA_031852725.1ContigJAVRYR000000000SAMN37310491
20-10
Staphylococcus pseudintermedius
GCA_031852705.1ContigJAVRYQ000000000SAMN37310520
20-0654
Staphylococcus pseudintermedius

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