ID 1036794 - BioProject

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Accession: PRJNA1036794 ID: 1036794

A molecular epidemiological and transmission analysis of Clostridioides difficile using draft whole-genome sequencing in a single hospital.

To analyze C. difficile nosocomial transmission, we performed screening culture, whole-genome sequencing, and genetic relationship analysis.

Accession	PRJNA1036794
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 8-Nov-2023 Toho University
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	38
SRA Experiments	38
Other datasets
BioSample	38
Assembly	38

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

38
38

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_033841005.1	JAWXRZ000000000	SAMN38150741	CD154	Clostridioides difficile
GCA_033840975.1	JAWXRY000000000	SAMN38150743	CD156	Clostridioides difficile
GCA_033840485.1	JAWXRN000000000	SAMN38150754	CD298	Clostridioides difficile
GCA_033840445.1	JAWXRM000000000	SAMN38150755	CD299	Clostridioides difficile
GCA_033840405.1	JAWXRL000000000	SAMN38150756	CD300	Clostridioides difficile
GCA_033840375.1	JAWXRJ000000000	SAMN38150758	CD302	Clostridioides difficile
GCA_033840345.1	JAWXRK000000000	SAMN38150757	CD301	Clostridioides difficile
GCA_033840265.1	JAWXRI000000000	SAMN38150759	CD303	Clostridioides difficile
GCA_033840245.1	JAWXRH000000000	SAMN38150760	CD304	Clostridioides difficile
GCA_033840955.1	JAWXRW000000000	SAMN38150745	CD158	Clostridioides difficile
GCA_033840845.1	JAWXRV000000000	SAMN38150746	CD159	Clostridioides difficile
GCA_033840855.1	JAWXRX000000000	SAMN38150744	CD157	Clostridioides difficile
GCA_033840805.1	JAWXRU000000000	SAMN38150747	CD160	Clostridioides difficile
GCA_033840785.1	JAWXRT000000000	SAMN38150748	CD161	Clostridioides difficile
GCA_033840685.1	JAWXRS000000000	SAMN38150749	CD162	Clostridioides difficile
GCA_033840625.1	JAWXRQ000000000	SAMN38150751	CD164	Clostridioides difficile
GCA_033840635.1	JAWXRR000000000	SAMN38150750	CD163	Clostridioides difficile
GCA_033840595.1	JAWXRP000000000	SAMN38150752	CD296	Clostridioides difficile
GCA_033840565.1	JAWXRO000000000	SAMN38150753	CD297	Clostridioides difficile
GCA_033840145.1	JAWXRG000000000	SAMN38150761	CD305	Clostridioides difficile
GCA_033841505.1	JAWXSO000000000	SAMN38150725	CD009	Clostridioides difficile
GCA_033841445.1	JAWXSK000000000	SAMN38150729	CD013	Clostridioides difficile
GCA_033841455.1	JAWXSN000000000	SAMN38150726	CD010	Clostridioides difficile
GCA_033841435.1	JAWXSL000000000	SAMN38150728	CD012	Clostridioides difficile
GCA_033841425.1	JAWXSM000000000	SAMN38150727	CD011	Clostridioides difficile
GCA_033841405.1	JAWXSH000000000	SAMN38150732	CD054	Clostridioides difficile
GCA_033841375.1	JAWXSJ000000000	SAMN38150730	CD014	Clostridioides difficile
GCA_033841365.1	JAWXSI000000000	SAMN38150731	CD015	Clostridioides difficile
GCA_033841315.1	JAWXSF000000000	SAMN38150735	CD083	Clostridioides difficile
GCA_033841335.1	JAWXSG000000000	SAMN38150733	CD055	Clostridioides difficile
GCA_033841605.1	JAWXSP000000000	SAMN38150724	CD008	Clostridioides difficile
GCA_033841185.1	JAWXSC000000000	SAMN38150738	CD086	Clostridioides difficile
GCA_033841195.1	JAWXSD000000000	SAMN38150737	CD085	Clostridioides difficile
GCA_033841205.1	JAWXSE000000000	SAMN38150736	CD084	Clostridioides difficile
GCA_033841075.1	JAWXSA000000000	SAMN38150740	CD153	Clostridioides difficile
GCA_033841045.1	JAWXSB000000000	SAMN38150739	CD087	Clostridioides difficile
GCA_035818945.1	JAYMCT000000000	SAMN38150734	CD082	Clostridioides difficile
GCA_035818915.1	JAYMCS000000000	SAMN38150742	CD155	Clostridioides difficile

SRA Data Details

Parameter	Value
Data volume, Gbases	17
Data volume, Mbytes	10807

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A molecular epidemiological and transmission analysis of Clostridioides difficile using draft whole-genome sequencing in a single hospital.

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