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Accession: PRJNA1023754 ID: 1023754

Metagenomic and -transcriptomic data from deep biosphere

Metagenomic and -transcriptomic samples from Aspo Hard Rock Laboratory, a location containing deep subsurface groundwater, was collected to study microbial community composition, their metabolic potential and their activity.
AccessionPRJNA1023754
Data TypeGenome sequencing
ScopeMultispecies
PublicationsDopson M et al., "Novel candidate taxa contribute to key metabolic processes in Fennoscandian Shield deep groundwaters.", ISME Commun, 2024 Jan;4(1):ycae113
SubmissionRegistration date: 4-Oct-2023
Linnaeus University
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)820
Publications
PubMed1
PMC1
Other datasets
BioSample823
Assembly823
Assembly details:
Assembly levelNumber of Assemblies
823
823
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_043825935.1ContigJBDRRD000000000SAMN39497291
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MEGAHIT-group-0.236
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MEGAHIT-group-1.7
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GCA_043812975.1ContigJBDRLP000000000SAMN39497147
MEGAHIT-group-1.784
GCA_043815085.1ContigJBDRJG000000000SAMN39497086
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GCA_043815885.1ContigJBDRIL000000000SAMN39497065
MEGAHIT-group-1.583
GCA_043819075.1ContigJBDRFE000000000SAMN39496980
MEGAHIT-group-1.353
GCA_043815105.1ContigJBDRJI000000000SAMN39497088
MEGAHIT-group-1.64
GCA_043815245.1ContigJBDRJD000000000SAMN39497083
MEGAHIT-group-1.626
GCA_043814545.1ContigJBDRJY000000000SAMN39497104
MEGAHIT-group-1.682
GCA_043814495.1ContigJBDRKA000000000SAMN39497106
MEGAHIT-group-1.69
GCA_043813875.1ContigJBDRKP000000000SAMN39497121
MEGAHIT-group-1.727
GCA_043814075.1ContigJBDRKK000000000SAMN39497116
MEGAHIT-group-1.701
GCA_043814055.1ContigJBDRKL000000000SAMN39497117
MEGAHIT-group-1.702
GCA_043813665.1ContigJBDRKU000000000SAMN39497126
MEGAHIT-group-1.735
GCA_043811855.1ContigJBDRMT000000000SAMN39497177
MEGAHIT-group-1.845
GCA_043812455.1ContigJBDRMB000000000SAMN39497159
MEGAHIT-group-1.81
GCA_043811615.1ContigJBDRNA000000000SAMN39497184
MEGAHIT-group-1.86
GCA_043811045.1ContigJBDRNM000000000SAMN39497196
MEGAHIT-group-1.887
GCA_043810775.1ContigJBDRNU000000000SAMN39497204
MEGAHIT-group-1.914
GCA_043810755.1ContigJBDRNW000000000SAMN39497206
MEGAHIT-group-1.917
GCA_043810865.1ContigJBDRNS000000000SAMN39497202
MEGAHIT-group-1.908
GCA_043810595.1ContigJBDRNX000000000SAMN39497207
MEGAHIT-group-1.920
GCA_043810285.1ContigJBDROH000000000SAMN39497217
MEGAHIT-group-1.942
GCA_043803745.1ContigJAZDJS000000000SAMN39496692
MEGAHIT-group-0.5
GCA_043805675.1ContigJAZDHR000000000SAMN39496639
MEGAHIT-group-0.346
GCA_043806035.1ContigJAZDHK000000000SAMN39496632
MEGAHIT-group-0.318
GCA_043809305.1ContigJAZDEA000000000SAMN39496544
MEGAHIT-group-0.116
GCA_043808805.1ContigJAZDEN000000000SAMN39496557
MEGAHIT-group-0.152
GCA_043808285.1ContigJAZDFA000000000SAMN39496570
MEGAHIT-group-0.177
GCA_043808705.1ContigJAZDEO000000000SAMN39496558
MEGAHIT-group-0.155
GCA_043808235.1ContigJAZDFC000000000SAMN39496572
MEGAHIT-group-0.183
GCA_043808545.1ContigJAZDEU000000000SAMN39496564
MEGAHIT-group-0.164
GCA_043808725.1ContigJAZDEP000000000SAMN39496559
MEGAHIT-group-0.157
GCA_043809365.1ContigJAZDDW000000000SAMN39496540
MEGAHIT-group-0.11
GCA_043809405.1ContigJAZDDU000000000SAMN39496538
MEGAHIT-group-0.10
GCA_043808975.1ContigJAZDEH000000000SAMN39496551
MEGAHIT-group-0.130
GCA_043808845.1ContigJAZDEJ000000000SAMN39496553
MEGAHIT-group-0.14
GCA_043806735.1ContigJAZDGR000000000SAMN39496613
MEGAHIT-group-0.275
GCA_043806935.1ContigJAZDGP000000000SAMN39496611
MEGAHIT-group-0.272
GCA_043807225.1ContigJAZDGG000000000SAMN39496602
MEGAHIT-group-0.240
GCA_043806975.1ContigJAZDGL000000000SAMN39496607
MEGAHIT-group-0.262
GCA_043807085.1ContigJAZDGI000000000SAMN39496604
MEGAHIT-group-0.246
GCA_043808035.1ContigJAZDFH000000000SAMN39496577
MEGAHIT-group-0.198
GCA_043807825.1ContigJAZDFM000000000SAMN39496582
MEGAHIT-group-0.207
GCA_043807665.1ContigJAZDFS000000000SAMN39496588
MEGAHIT-group-0.219
GCA_043807885.1ContigJAZDFN000000000SAMN39496583
MEGAHIT-group-0.209
GCA_043807655.1ContigJAZDFR000000000SAMN39496587
MEGAHIT-group-0.217
GCA_043807485.1ContigJAZDFX000000000SAMN39496593
MEGAHIT-group-0.226
GCA_043806295.1ContigJAZDHA000000000SAMN39496622
MEGAHIT-group-0.294
GCA_043805435.1ContigJAZDHY000000000SAMN39496646
MEGAHIT-group-0.373
GCA_043803945.1ContigJAZDJN000000000SAMN39496687
MEGAHIT-group-0.487
GCA_043804065.1ContigJAZDJK000000000SAMN39496684
MEGAHIT-group-0.478
GCA_043804125.1ContigJAZDJI000000000SAMN39496682
MEGAHIT-group-0.471
GCA_043804285.1ContigJAZDJD000000000SAMN39496677
MEGAHIT-group-0.456
GCA_043804925.1ContigJAZDIP000000000SAMN39496663
MEGAHIT-group-0.412
GCA_043804775.1ContigJAZDIR000000000SAMN39496665
MEGAHIT-group-0.415
GCA_043804575.1ContigJAZDIW000000000SAMN39496670
MEGAHIT-group-0.427
GCA_043805085.1ContigJAZDII000000000SAMN39496656
MEGAHIT-group-0.390
GCA_043810165.1ContigJBDROJ000000000SAMN39497219
MEGAHIT-group-1.947
GCA_043809745.1ContigJBDROU000000000SAMN39497230
MEGAHIT-group-1.972
GCA_043809805.1ContigJBDROR000000000SAMN39497227
MEGAHIT-group-1.965
GCA_043809845.1ContigJBDROS000000000SAMN39497228
MEGAHIT-group-1.970
GCA_043811375.1ContigJBDRNJ000000000SAMN39497193
MEGAHIT-group-1.882
GCA_043812215.1ContigJBDRMJ000000000SAMN39497167
MEGAHIT-group-1.825
GCA_043811915.1ContigJBDRMS000000000SAMN39497176
MEGAHIT-group-1.842
GCA_043811795.1ContigJBDRMV000000000SAMN39497179
MEGAHIT-group-1.849
GCA_043811735.1ContigJBDRMW000000000SAMN39497180
MEGAHIT-group-1.85
GCA_043811955.1ContigJBDRMQ000000000SAMN39497174
MEGAHIT-group-1.837
GCA_043812555.1ContigJBDRLZ000000000SAMN39497157
MEGAHIT-group-1.804
GCA_043812655.1ContigJBDRLW000000000SAMN39497154
MEGAHIT-group-1.8
GCA_043814525.1ContigJBDRJX000000000SAMN39497103
MEGAHIT-group-1.680
GCA_043814565.1ContigJBDRJW000000000SAMN39497102
MEGAHIT-group-1.677
GCA_043814645.1ContigJBDRJU000000000SAMN39497100
MEGAHIT-group-1.670
GCA_043813955.1ContigJBDRKN000000000SAMN39497119
MEGAHIT-group-1.725
GCA_043814235.1ContigJBDRKF000000000SAMN39497111
MEGAHIT-group-1.696
GCA_043814215.1ContigJBDRKG000000000SAMN39497112
MEGAHIT-group-1.697
GCA_043814425.1ContigJBDRJZ000000000SAMN39497105
MEGAHIT-group-1.688
GCA_043819255.1ContigJBDRFB000000000SAMN39496977
MEGAHIT-group-1.344
GCA_043819215.1ContigJBDREZ000000000SAMN39496975
MEGAHIT-group-1.339
GCA_043819515.1ContigJBDRES000000000SAMN39496968
MEGAHIT-group-1.326
GCA_043818495.1ContigJBDRFT000000000SAMN39496995
MEGAHIT-group-1.386
GCA_043818555.1ContigJBDRFP000000000SAMN39496991
MEGAHIT-group-1.379
GCA_043818835.1ContigJBDRFK000000000SAMN39496986
MEGAHIT-group-1.37
GCA_043819815.1ContigJBDREK000000000SAMN39496960
MEGAHIT-group-1.31
GCA_043820455.1ContigJBDRDU000000000SAMN39496944
MEGAHIT-group-1.272
GCA_043820745.1ContigJBDRDN000000000SAMN39496937
MEGAHIT-group-1.251
GCA_043820875.1ContigJBDRDI000000000SAMN39496932
MEGAHIT-group-1.240
GCA_043820855.1ContigJBDRDK000000000SAMN39496934
MEGAHIT-group-1.245
GCA_043816125.1ContigJBDRIF000000000SAMN39497059
MEGAHIT-group-1.57
GCA_043815725.1ContigJBDRIS000000000SAMN39497072
MEGAHIT-group-1.598
GCA_043815765.1ContigJBDRIQ000000000SAMN39497070
MEGAHIT-group-1.595
GCA_043815505.1ContigJBDRIV000000000SAMN39497075
MEGAHIT-group-1.60
GCA_043816465.1ContigJBDRHV000000000SAMN39497049
MEGAHIT-group-1.550
GCA_043816875.1ContigJBDRHI000000000SAMN39497036
MEGAHIT-group-1.501
GCA_043816765.1ContigJBDRHN000000000SAMN39497041
MEGAHIT-group-1.518
GCA_043816645.1ContigJBDRHS000000000SAMN39497046
MEGAHIT-group-1.544
GCA_043817685.1ContigJBDRGQ000000000SAMN39497018
MEGAHIT-group-1.445
GCA_043817835.1ContigJBDRGJ000000000SAMN39497011
MEGAHIT-group-1.427
GCA_043818275.1ContigJBDRFY000000000SAMN39497000
MEGAHIT-group-1.402
GCA_043817485.1ContigJBDRGX000000000SAMN39497025
MEGAHIT-group-1.471
GCA_043826235.1ContigJBDRQP000000000SAMN39497277
MEGAHIT-group-2.5
GCA_043826025.1ContigJBDRQZ000000000SAMN39497287
MEGAHIT-group-2.70
GCA_043826005.1ContigJBDRRA000000000SAMN39497288
MEGAHIT-group-2.74
GCA_043825985.1ContigJBDRRB000000000SAMN39497289
MEGAHIT-group-2.75
GCA_043825965.1ContigJBDRRC000000000SAMN39497290
MEGAHIT-group-2.79
GCA_043826395.1ContigJBDRQH000000000SAMN39497269
MEGAHIT-group-2.35
GCA_043826375.1ContigJBDRQJ000000000SAMN39497271
MEGAHIT-group-2.37
GCA_043826475.1ContigJBDRQG000000000SAMN39497268
MEGAHIT-group-2.34
GCA_043825615.1ContigJBDRRS000000000SAMN39497306
MEGAHIT-group-3.104
GCA_043825095.1ContigJBDRSE000000000SAMN39497318
MEGAHIT-group-3.13
GCA_043825255.1ContigJBDRSB000000000SAMN39497315
MEGAHIT-group-3.124
GCA_043827125.1ContigJBDRPK000000000SAMN39497246
MEGAHIT-group-2.114
GCA_043827085.1ContigJBDRPO000000000SAMN39497250
MEGAHIT-group-2.121
GCA_043822525.1ContigJBDRBS000000000SAMN39496890
MEGAHIT-group-1.14
GCA_043821785.1ContigJBDRCK000000000SAMN39496908
MEGAHIT-group-1.182
GCA_043821725.1ContigJBDRCM000000000SAMN39496910
MEGAHIT-group-1.185
GCA_043821245.1ContigJBDRDB000000000SAMN39496925
MEGAHIT-group-1.230
GCA_043821115.1ContigJBDRDD000000000SAMN39496927
MEGAHIT-group-1.232
GCA_043823125.1ContigJBDRBC000000000SAMN39496874
MEGAHIT-group-1.1038
GCA_043822925.1ContigJBDRBF000000000SAMN39496877
MEGAHIT-group-1.1042
GCA_043823555.1ContigJBDRAQ000000000SAMN39496862
MEGAHIT-group-1.101
GCA_043823645.1ContigJBDRAO000000000SAMN39496860
MEGAHIT-group-1.1005
GCA_043823615.1ContigJBDRAP000000000SAMN39496861
MEGAHIT-group-1.1006
GCA_043823315.1ContigJBDRAU000000000SAMN39496866
MEGAHIT-group-1.1015
GCA_043822845.1ContigJBDRBH000000000SAMN39496879
MEGAHIT-group-1.109
GCA_043824375.1ContigJBDRTB000000000SAMN39497341
MEGAHIT-group-3.46
GCA_043824415.1ContigJBDRSZ000000000SAMN39497339
MEGAHIT-group-3.41
GCA_043824525.1ContigJBDRST000000000SAMN39497333
MEGAHIT-group-3.28
GCA_043824255.1ContigJBDRTG000000000SAMN39497346
MEGAHIT-group-3.50
GCA_043824275.1ContigJBDRTF000000000SAMN39497345
MEGAHIT-group-3.5
GCA_043824145.1ContigJBDRTK000000000SAMN39497350
MEGAHIT-group-3.64
GCA_043798775.1ContigJAZDOL000000000SAMN39496815
MEGAHIT-group-0.771
GCA_043798715.1ContigJAZDOK000000000SAMN39496814
MEGAHIT-group-0.768
GCA_043798995.1ContigJAZDOD000000000SAMN39496807
MEGAHIT-group-0.75
GCA_043797865.1ContigJAZDPE000000000SAMN39496834
MEGAHIT-group-0.820
GCA_043798165.1ContigJAZDOY000000000SAMN39496828
MEGAHIT-group-0.802
GCA_043798435.1ContigJAZDOR000000000SAMN39496821
MEGAHIT-group-0.789
GCA_043798305.1ContigJAZDOV000000000SAMN39496825
MEGAHIT-group-0.799
GCA_043800755.1ContigJAZDMQ000000000SAMN39496768
MEGAHIT-group-0.667
GCA_043800725.1ContigJAZDMR000000000SAMN39496769
MEGAHIT-group-0.67
GCA_043800535.1ContigJAZDMV000000000SAMN39496773
MEGAHIT-group-0.677
GCA_043800235.1ContigJAZDNE000000000SAMN39496782
MEGAHIT-group-0.699
GCA_043800435.1ContigJAZDMY000000000SAMN39496776
MEGAHIT-group-0.684
GCA_043800365.1ContigJAZDNA000000000SAMN39496778
MEGAHIT-group-0.687
GCA_043801765.1ContigJAZDLS000000000SAMN39496744
MEGAHIT-group-0.612
GCA_043801935.1ContigJAZDLO000000000SAMN39496740
MEGAHIT-group-0.602
GCA_043801895.1ContigJAZDLM000000000SAMN39496738
MEGAHIT-group-0.594
GCA_043802115.1ContigJAZDLJ000000000SAMN39496735
MEGAHIT-group-0.590
GCA_043800995.1ContigJAZDML000000000SAMN39496763
MEGAHIT-group-0.649
GCA_043801245.1ContigJAZDMH000000000SAMN39496759
MEGAHIT-group-0.64
GCA_043801585.1ContigJAZDLX000000000SAMN39496749
MEGAHIT-group-0.623
GCA_043802845.1ContigJAZDKO000000000SAMN39496714
MEGAHIT-group-0.538
GCA_043802745.1ContigJAZDKU000000000SAMN39496720
MEGAHIT-group-0.551
GCA_043802525.1ContigJAZDKY000000000SAMN39496724
MEGAHIT-group-0.556
GCA_043797465.1ContigJAZDPQ000000000SAMN39496846
MEGAHIT-group-0.853
GCA_043797385.1ContigJAZDPT000000000SAMN39496849
MEGAHIT-group-0.857
GCA_043797105.1ContigJAZDPZ000000000SAMN39496855
MEGAHIT-group-0.93
SRA Data Details
ParameterValue
Data volume, Gbases306
Data volume, Tbytes0.11

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