ID 1187984 - BioProject

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Accession: PRJEB82471 ID: 1187984

Metagenome assembly of PRJNA947933 data set (Time series of chicken stool metagenomics and egg metabolomics in changing production systems)

The Third Party Annotation (TPA) assembly was derived from the primary data set PRJNA947933

Accession	PRJEB82471
Data Type	Genome sequencing
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Richardson L et al., "MGnify: the microbiome sequence data analysis resource in 2023.", Nucleic Acids Res, 2023 Jan 6;51(D1):D753-D759
Submission	Registration date: 19-Nov-2024 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	21960
WGS master	176
Publications
PubMed	1
PMC	1
Other datasets
BioSample	176
Assembly	176

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

176
176

Assembly	WGS	BioSample	Taxonomy
GCA_964383085.1	CAYLFX000000000	SAMEA117402201	Aeriscardovia aeriphila
GCA_964382065.1	CAYLBL000000000	SAMEA117402053	Bifidobacterium pseudolongum
GCA_964382115.1	CAYLCI000000000	SAMEA117402059	Bifidobacterium pullorum
GCA_964382465.1	CAYLDM000000000	SAMEA117402165	Bifidobacterium pullorum
GCA_964382855.1	CAYLFK000000000	SAMEA117402115	Brachybacterium alimentarium
GCA_964383265.1	CAYLGK000000000	SAMEA117402166	Brevibacterium aurantiacum
GCA_964382015.1	CAYLBV000000000	SAMEA117402060	Candidatus Alistipes avicola
GCA_964383045.1	CAYLFT000000000	SAMEA117402153	Candidatus Anaerobutyricum stercoripullorum
GCA_964383075.1	CAYLFP000000000	SAMEA117402158	Candidatus Avibacteroides faecavium
GCA_964382595.1	CAYLDL000000000	SAMEA117402192	Candidatus Avitreponema avistercoris
GCA_964382535.1	CAYLEH000000000	SAMEA117402184	Candidatus Barnesiella excrementipullorum
GCA_964382135.1	CAYLCK000000000	SAMEA117402046	Candidatus Blautia excrementigallinarum
GCA_964381675.1	CAYLBE000000000	SAMEA117402075	Candidatus Caccocola faecigallinarum
GCA_964382685.1	CAYLEI000000000	SAMEA117402159	Candidatus Coprenecus stercoripullorum
GCA_964382095.1	CAYLCC000000000	SAMEA117402045	Candidatus Cryptobacteroides avistercoris
GCA_964383005.1	CAYLGM000000000	SAMEA117402146	Candidatus Cryptobacteroides excrementipullorum
GCA_964382585.1	CAYLEJ000000000	SAMEA117402103	Candidatus Cryptobacteroides gallistercoris
GCA_964382445.1	CAYLDN000000000	SAMEA117402188	Candidatus Enterocola intestinipullorum
GCA_964383275.1	CAYLGO000000000	SAMEA117402147	Candidatus Faecousia intestinavium
GCA_964382985.1	CAYLFJ000000000	SAMEA117402152	Candidatus Fimimorpha faecalis
GCA_964382425.1	CAYLDC000000000	SAMEA117402181	Candidatus Fimousia stercorigallinarum
GCA_964381995.1	CAYLBR000000000	SAMEA117402068	Candidatus Gallispira edinburgensis
GCA_964382125.1	CAYLCN000000000	SAMEA117402051	Candidatus Gemmiger excrementipullorum
GCA_964382175.1	CAYLCQ000000000	SAMEA117402048	Candidatus Gemmiger stercoripullorum
GCA_964382845.1	CAYLEM000000000	SAMEA117402171	Candidatus Helicobacter avistercoris
GCA_964382195.1	CAYLBW000000000	SAMEA117402036	Candidatus Ligilactobacillus avistercoris
GCA_964382565.1	CAYLEA000000000	SAMEA117402105	Candidatus Limisoma faecipullorum
GCA_964382145.1	CAYLCJ000000000	SAMEA117402052	Candidatus Mediterraneibacter guildfordensis
GCA_964383215.1	CAYLFZ000000000	SAMEA117402111	Candidatus Merdivivens pullicola
GCA_964382495.1	CAYLEK000000000	SAMEA117402107	Candidatus Parabacteroides intestinavium
GCA_964381565.1	CAYLAC000000000	SAMEA117402040	Candidatus Paralactobacillus gallistercoris
GCA_964382455.1	CAYLDY000000000	SAMEA117402148	Candidatus Phocaeicola excrementigallinarum
GCA_964381705.1	CAYLAJ000000000	SAMEA117402034	Candidatus Rothia avicola
GCA_964381535.1	CAYLAE000000000	SAMEA117402067	Candidatus Scatomorpha stercoravium
GCA_964383105.1	CAYLGL000000000	SAMEA117402117	Candidatus Scybalomonas excrementigallinarum
GCA_964383135.1	CAYLGD000000000	SAMEA117402144	Clostridium perfringens
GCA_964382305.1	CAYLDH000000000	SAMEA117402142	Corynebacterium casei
GCA_964381735.1	CAYLAV000000000	SAMEA117402037	Corynebacterium pollutisoli
GCA_964382345.1	CAYLDI000000000	SAMEA117402141	Corynebacterium stationis
GCA_964383055.1	CAYLGQ000000000	SAMEA117402028	Debaryomyces hansenii CBS767
GCA_964382435.1	CAYLEF000000000	SAMEA117402127	Enterococcus casseliflavus
GCA_964382875.1	CAYLEL000000000	SAMEA117402126	Enterococcus columbae
GCA_964382365.1	CAYLCX000000000	SAMEA117402180	Enterococcus faecium
GCA_964381795.1	CAYLAO000000000	SAMEA117402084	Escherichia coli
GCA_964381865.1	CAYLBB000000000	SAMEA117402041	Faecalicoccus acidiformans
GCA_964382085.1	CAYLBK000000000	SAMEA117402099	Faecalitalea cylindroides
GCA_964383145.1	CAYLGE000000000	SAMEA117402197	Gallibacterium anatis
GCA_964383115.1	CAYLFE000000000	SAMEA117402198	Galliscardovia ingluviei
GCA_964381975.1	CAYLCL000000000	SAMEA117402033	Glaciibacter flavus
GCA_964381965.1	CAYLCF000000000	SAMEA117402064	Glutamicibacter arilaitensis
GCA_964382005.1	CAYLCU000000000	SAMEA117402027	Kazachstania sp.
GCA_964381815.1	CAYLBN000000000	SAMEA117402092	Kocuria carniphila
GCA_964382775.1	CAYLEG000000000	SAMEA117402112	Lacticaseibacillus paracasei
GCA_964381845.1	CAYLAY000000000	SAMEA117402055	Lactiplantibacillus plantarum
GCA_964381725.1	CAYLAZ000000000	SAMEA117402030	Lactobacillus gallinarum
GCA_964381805.1	CAYLAN000000000	SAMEA117402061	Lactobacillus kitasatonis
GCA_964381575.1	CAYLAD000000000	SAMEA117402093	Lactococcus cremoris
GCA_964382655.1	CAYLFN000000000	SAMEA117402123	Lelliottia amnigena
GCA_964383235.1	CAYLFO000000000	SAMEA117402173	Leuconostoc citreum
GCA_964381935.1	CAYLBQ000000000	SAMEA117402035	Leuconostoc pseudomesenteroides
GCA_964382315.1	CAYLCV000000000	SAMEA117402119	Levilactobacillus brevis
GCA_964382645.1	CAYLEB000000000	SAMEA117402150	Ligilactobacillus agilis
GCA_964382395.1	CAYLDD000000000	SAMEA117402129	Ligilactobacillus salivarius
GCA_964382955.1	CAYLES000000000	SAMEA117402178	Limosilactobacillus alvi
GCA_964382995.1	CAYLEY000000000	SAMEA117402151	Limosilactobacillus ingluviei
GCA_964381905.1	CAYLBD000000000	SAMEA117402057	Limosilactobacillus oris
GCA_964382355.1	CAYLDA000000000	SAMEA117402131	Limosilactobacillus reuteri
GCA_964382695.1	CAYLDR000000000	SAMEA117402125	Limosilactobacillus vaginalis
GCA_964382265.1	CAYLCS000000000	SAMEA117402062	Megamonas funiformis
GCA_964381595.1	CAYKZY000000000	SAMEA117402085	Megamonas hypermegale
GCA_964382415.1	CAYLDV000000000	SAMEA117402191	Megamonas hypermegale
GCA_964383015.1	CAYLEQ000000000	SAMEA117402155	Methanobrevibacter woesei
GCA_964382825.1	CAYLFH000000000	SAMEA117402160	Mordavella massiliensis
GCA_964382935.1	CAYLFS000000000	SAMEA117402174	Paucilactobacillus nenjiangensis
GCA_964382885.1	CAYLET000000000	SAMEA117402164	Phocaeicola barnesiae
GCA_964382525.1	CAYLDE000000000	SAMEA117402114	Staphylococcus equorum
GCA_964383065.1	CAYLFM000000000	SAMEA117402145	Staphylococcus xylosus
GCA_964383245.1	CAYLFY000000000	SAMEA117402128	Trichococcus shcherbakoviae
GCA_964382745.1	CAYLDP000000000	SAMEA117402199	Veillonella magna
GCA_964382715.1	CAYLDS000000000	SAMEA117402124	Weissella paramesenteroides
GCA_964382635.1	CAYLEE000000000	SAMEA117402195	uncultured Actinomycetaceae bacterium
GCA_964382545.1	CAYLDB000000000	SAMEA117402140	uncultured Aeriscardovia sp.
GCA_964382835.1	CAYLEZ000000000	SAMEA117402161	uncultured Agathobaculum sp.
GCA_964381615.1	CAYLAF000000000	SAMEA117402072	uncultured Alistipes sp.
GCA_964382225.1	CAYLCR000000000	SAMEA117402074	uncultured Alistipes sp.
GCA_964382705.1	CAYLEV000000000	SAMEA117402120	uncultured Arthrobacter sp.
GCA_964381945.1	CAYLBH000000000	SAMEA117402071	uncultured Bacilli bacterium
GCA_964382165.1	CAYLCP000000000	SAMEA117402042	uncultured Bacteroidaceae bacterium
GCA_964382105.1	CAYLBY000000000	SAMEA117402083	uncultured Bacteroidales bacterium
GCA_964381755.1	CAYLBA000000000	SAMEA117402079	uncultured Bacteroidales bacterium
GCA_964382485.1	CAYLDQ000000000	SAMEA117402157	uncultured Bacteroidales bacterium
GCA_964382215.1	CAYLCO000000000	SAMEA117402081	uncultured Bacteroides sp.
GCA_964382675.1	CAYLFL000000000	SAMEA117402194	uncultured Bacteroides sp.
GCA_964381655.1	CAYLAL000000000	SAMEA117402077	uncultured Bacteroides sp.
GCA_964383225.1	CAYLGN000000000	SAMEA117402134	uncultured Brachybacterium sp.
GCA_964382555.1	CAYLDO000000000	SAMEA117402138	uncultured Bulleidia sp.
GCA_964381925.1	CAYLBP000000000	SAMEA117402073	uncultured Clostridia bacterium
GCA_964381745.1	CAYLAT000000000	SAMEA117402080	uncultured Clostridia bacterium
GCA_964381985.1	CAYLCA000000000	SAMEA117402089	uncultured Clostridia bacterium
GCA_964382795.1	CAYLFQ000000000	SAMEA117402106	uncultured Clostridia bacterium
GCA_964383095.1	CAYLGG000000000	SAMEA117402108	uncultured Clostridia bacterium
GCA_964382055.1	CAYLBS000000000	SAMEA117402069	uncultured Clostridia bacterium
GCA_964383205.1	CAYLGF000000000	SAMEA117402169	uncultured Clostridium sp.
GCA_964382615.1	CAYLEC000000000	SAMEA117402109	uncultured Collinsella sp.
GCA_964383175.1	CAYLGR000000000	SAMEA117402118	uncultured Corallococcus sp.
GCA_964382275.1	CAYLCY000000000	SAMEA117402162	uncultured Coriobacteriaceae bacterium
GCA_964382075.1	CAYLCB000000000	SAMEA117402082	uncultured Eggerthella sp.
GCA_964382915.1	CAYLFC000000000	SAMEA117402183	uncultured Eggerthellaceae bacterium
GCA_964381825.1	CAYLAS000000000	SAMEA117402098	uncultured Erysipelotrichaceae bacterium
GCA_964381785.1	CAYLAR000000000	SAMEA117402101	uncultured Erysipelotrichaceae bacterium
GCA_964383185.1	CAYLGJ000000000	SAMEA117402136	uncultured Eubacteriales bacterium
GCA_964382505.1	CAYLDT000000000	SAMEA117402168	uncultured Eubacterium sp.
GCA_964382975.1	CAYLGA000000000	SAMEA117402154	uncultured Faecalibacterium sp.
GCA_964383025.1	CAYLEX000000000	SAMEA117402156	uncultured Faecalicoccus sp.
GCA_964381955.1	CAYLBG000000000	SAMEA117402056	uncultured Furfurilactobacillus sp.
GCA_964382625.1	CAYLDF000000000	SAMEA117402200	uncultured Gammaproteobacteria bacterium
GCA_964382025.1	CAYLCH000000000	SAMEA117402065	uncultured Intrasporangiaceae bacterium
GCA_964382665.1	CAYLEU000000000	SAMEA117402116	uncultured Jeotgalicoccus sp.
GCA_964382375.1	CAYLDG000000000	SAMEA117402113	uncultured Knoellia sp.
GCA_964381645.1	CAYLAG000000000	SAMEA117402076	uncultured Lachnospira sp.
GCA_964382785.1	CAYLEW000000000	SAMEA117402110	uncultured Lachnospiraceae bacterium
GCA_964382895.1	CAYLFB000000000	SAMEA117402187	uncultured Lachnospiraceae bacterium
GCA_964382865.1	CAYLER000000000	SAMEA117402163	uncultured Lachnospiraceae bacterium
GCA_964383035.1	CAYLGI000000000	SAMEA117402185	uncultured Lachnospiraceae bacterium
GCA_964381885.1	CAYLBM000000000	SAMEA117402078	uncultured Lachnospiraceae bacterium
GCA_964382235.1	CAYLCT000000000	SAMEA117402058	uncultured Lachnospiraceae bacterium
GCA_964382045.1	CAYLBZ000000000	SAMEA117402054	uncultured Lacticaseibacillus sp.
GCA_964382945.1	CAYLFD000000000	SAMEA117402202	uncultured Lactobacillaceae bacterium
GCA_964381635.1	CAYLAB000000000	SAMEA117402095	uncultured Lactobacillaceae bacterium
GCA_964381625.1	CAYLAK000000000	SAMEA117402039	uncultured Lactobacillus sp.
GCA_964382155.1	CAYLBT000000000	SAMEA117402043	uncultured Lactobacillus sp.
GCA_964383125.1	CAYLFI000000000	SAMEA117402179	uncultured Lactobacillus sp.
GCA_964382205.1	CAYLCE000000000	SAMEA117402050	uncultured Ligilactobacillus sp.
GCA_964382245.1	CAYLCG000000000	SAMEA117402096	uncultured Ligilactobacillus sp.
GCA_964381875.1	CAYLBC000000000	SAMEA117402029	uncultured Ligilactobacillus sp.
GCA_964382185.1	CAYLCD000000000	SAMEA117402049	uncultured Limosilactobacillus sp.
GCA_964382605.1	CAYLDU000000000	SAMEA117402182	uncultured Limosilactobacillus sp.
GCA_964382285.1	CAYLDK000000000	SAMEA117402190	uncultured Massilimicrobiota sp.
GCA_964382815.1	CAYLEO000000000	SAMEA117402170	uncultured Mediterraneibacter sp.
GCA_964381715.1	CAYLAI000000000	SAMEA117402100	uncultured Merdibacter sp.
GCA_964381525.1	CAYLAQ000000000	SAMEA117402031	uncultured Micropruina sp.
GCA_964382725.1	CAYLFR000000000	SAMEA117402121	uncultured Nocardiopsis sp.
GCA_964382805.1	CAYLFW000000000	SAMEA117402102	uncultured Oscillospiraceae bacterium
GCA_964382755.1	CAYLFA000000000	SAMEA117402133	uncultured Oscillospiraceae bacterium
GCA_964382385.1	CAYLDX000000000	SAMEA117402189	uncultured Peptococcaceae bacterium
GCA_964382575.1	CAYLFG000000000	SAMEA117402149	uncultured Peptococcaceae bacterium
GCA_964382735.1	CAYLEN000000000	SAMEA117402139	uncultured Phascolarctobacterium sp.
GCA_964381835.1	CAYLBI000000000	SAMEA117402063	uncultured Phocaeicola sp.
GCA_964381855.1	CAYLAX000000000	SAMEA117402044	uncultured Prevotella sp.
GCA_964381895.1	CAYLBX000000000	SAMEA117402086	uncultured Prevotella sp.
GCA_964381775.1	CAYLBJ000000000	SAMEA117402088	uncultured Prevotella sp.
GCA_964381545.1	CAYLAH000000000	SAMEA117402047	uncultured Prevotella sp.
GCA_964381605.1	CAYLAW000000000	SAMEA117402087	uncultured Prevotella sp.
GCA_964383195.1	CAYLGB000000000	SAMEA117402132	uncultured Pseudoflavonifractor sp.
GCA_964382295.1	CAYLDW000000000	SAMEA117402176	uncultured Raineyella sp.
GCA_964383165.1	CAYLGP000000000	SAMEA117402122	uncultured Rhizobacter sp.
GCA_964382255.1	CAYLCM000000000	SAMEA117402097	uncultured Romboutsia sp.
GCA_964382035.1	CAYLBU000000000	SAMEA117402070	uncultured Ruminococcus sp.
GCA_964382475.1	CAYLED000000000	SAMEA117402143	uncultured Salinicoccus sp.
GCA_964382925.1	CAYLFF000000000	SAMEA117402177	uncultured Stenotrophomonas sp.
GCA_964382405.1	CAYLCW000000000	SAMEA117402167	uncultured Streptococcus sp.
GCA_964381555.1	CAYLAM000000000	SAMEA117402104	uncultured Sutterella sp.
GCA_964381765.1	CAYLAU000000000	SAMEA117402091	uncultured Tessaracoccus sp.
GCA_964382965.1	CAYLFV000000000	SAMEA117402135	uncultured Treponema sp.
GCA_964381915.1	CAYLBO000000000	SAMEA117402066	uncultured Turicibacter sp.
GCA_964382325.1	CAYLCZ000000000	SAMEA117402172	uncultured Yimella sp.
GCA_964383155.1	CAYLGH000000000	SAMEA117402137	uncultured bacterium
GCA_964381585.1	CAYKZZ000000000	SAMEA117402032	uncultured bacterium
GCA_964381665.1	CAYLBF000000000	SAMEA117402094	uncultured bacterium
GCA_964382765.1	CAYLEP000000000	SAMEA117402196	uncultured bacterium
GCA_964382515.1	CAYLDJ000000000	SAMEA117402193	uncultured bacterium
GCA_964382905.1	CAYLGC000000000	SAMEA117402175	uncultured bacterium
GCA_964383255.1	CAYLFU000000000	SAMEA117402186	uncultured bacterium
GCA_964382335.1	CAYLDZ000000000	SAMEA117402130	uncultured bacterium
GCA_964381685.1	CAYLAA000000000	SAMEA117402038	uncultured bacterium
GCA_964381695.1	CAYLAP000000000	SAMEA117402090	uncultured bacterium

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Metagenome assembly of PRJNA947933 data set (Time series of chicken stool metagenomics and egg metabolomics in changing production systems)

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