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Accession: PRJNA347285 ID: 347285

Bifidobacterium longum

RNA sequencing of Bifidobacterium longum subsp. longum SC596 in response to various substrates

See Genome Information for Bifidobacterium longum
The purpose of this project was to determine the whole transcriptome response of Bifidobacterium longum subsp. More...
AccessionPRJNA347285; GEO: GSE87697
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismBifidobacterium longum[Taxonomy ID: 216816]
Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; Bifidobacterium longum
PublicationsGarrido D et al., "A novel gene cluster allows preferential utilization of fucosylated milk oligosaccharides in Bifidobacterium longum subsp. longum SC596.", Sci Rep, 2016 Oct 19;6:35045
Grants
  • "Mechanism of Activation of Probiotic Bifidobacteria by Prebiotic Milk Glycans" (Grant ID R01 AT007079, National Center for Complementary and Integrative Health)
  • "Activation of probiotic bifidobacteria by milk glyans" (Grant ID R01 AT008759, National Center for Complementary and Integrative Health)
SubmissionRegistration date: 6-Oct-2016
Genome Center, University of California Davis
RelevanceMedical
Locus Tag PrefixACKRCZ
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)1
SRA Experiments18
Publications
PubMed1
PMC1
Other datasets
BioSample19
GEO DataSets1
Assembly1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes1
SRA Data Details
ParameterValue
Data volume, Gbases9
Data volume, Mbytes6364

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