Treponema pallidum subsp. pallidum strain:PT_SIF (ID 322283) - BioProject

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Accession: PRJNA322283 ID: 322283

Treponema pallidum subsp. pallidum strain:PT_SIF (syphilis treponeme)

Culture-independent targeted-WGS of the syphilis-causing agent Treponema pallidum directly from clinical samples

See Genome Information for Treponema pallidum

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55 additional projects are related by organism.

Human-pathogen arms race in syphilis involves Treponema pallidum extensive within-patient genetic variation

Accession	PRJNA322283
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Treponema pallidum subsp. pallidum[Taxonomy ID: 161] Bacteria; Pseudomonadati; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum
Grants	"Novel approach to understand syphilis" (Grant ID EXPL/BIA-MIC/0309/2013, Portuguese Foundation for Science and Technology)
Submission	Registration date: 25-Aug-2016 National Institute of Health, Portugal
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	19
SRA Experiments	25
Protein Sequences	18332
Other datasets
BioSample	26
Assembly	25

Assembly details:

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Assembly level

Number of Assemblies

Chromosome

Total

25
25

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_001713335.1	1	SAMN05150777	PT_SIF1348	Treponema pallidum subsp. pallidum
GCA_001713315.1	1	SAMN05150677	PT_SIF1299	Treponema pallidum subsp. pallidum
GCA_001713295.1	1	SAMN05150676	PT_SIF1280	Treponema pallidum subsp. pallidum
GCA_001713275.1	1	SAMN05150675	PT_SIF1278	Treponema pallidum subsp. pallidum
GCA_001713255.1	1	SAMN05150674	PT_SIF1261	Treponema pallidum subsp. pallidum
GCA_001713235.1	1	SAMN05150673	PT_SIF1252	Treponema pallidum subsp. pallidum
GCA_001713215.1	1	SAMN05150648	PT_SIF1242	Treponema pallidum subsp. pallidum
GCA_001713195.1	1	SAMN05150632	PT_SIF1200	Treponema pallidum subsp. pallidum
GCA_001713175.1	1	SAMN05150628	PT_SIF1196	Treponema pallidum subsp. pallidum
GCA_001713155.1	1	SAMN05150627	PT_SIF1183	Treponema pallidum subsp. pallidum
GCA_001713135.1	1	SAMN05150626	PT_SIF1167	Treponema pallidum subsp. pallidum
GCA_001713115.1	1	SAMN05150625	PT_SIF1156	Treponema pallidum subsp. pallidum
GCA_001713095.1	1	SAMN05150624	PT_SIF1142	Treponema pallidum subsp. pallidum
GCA_001713075.1	1	SAMN05150594	PT_SIF1140	Treponema pallidum subsp. pallidum
GCA_001713055.1	1	SAMN05150382	PT_SIF1135	Treponema pallidum subsp. pallidum
GCA_001713035.1	1	SAMN05150778	PT_SIF1127	Treponema pallidum subsp. pallidum
GCA_001713015.1	1	SAMN05150358	PT_SIF1063	Treponema pallidum subsp. pallidum
GCA_001712995.1	1	SAMN05150357	PT_SIF1020	Treponema pallidum subsp. pallidum
GCA_001712975.1	1	SAMN05150356	PT_SIF1002	Treponema pallidum subsp. pallidum
GCA_001712955.1	1	SAMN05150355	PT_SIF0954	Treponema pallidum subsp. pallidum
GCA_001712935.1	1	SAMN05150354	PT_SIF0908	Treponema pallidum subsp. pallidum
GCA_001712915.1	1	SAMN05173064	PT_SIF0857	Treponema pallidum subsp. pallidum
GCA_001712895.1	1	SAMN05150260	PT_SIF0697	Treponema pallidum subsp. pallidum
GCA_001761515.1	1	SAMN05150273	PT_SIF0751	Treponema pallidum subsp. pallidum
GCA_001761565.1	1	SAMN05150353	PT_SIF0877_3	Treponema pallidum subsp. pallidum

SRA Data Details

Parameter	Value
Data volume, Gbases	40
Data volume, Mbytes	25878

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Treponema pallidum subsp. pallidum strain:PT_SIF (syphilis treponeme)

Culture-independent targeted-WGS of the syphilis-causing agent Treponema pallidum directly from clinical samples

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