Genomes of P. chabaudi and P. berghei (ID 305111) - BioProject

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Accession: PRJEB11993 ID: 305111

Genomes of P. chabaudi and P. berghei

Draft assembly and annotation of Plasmodium chabaudi and Plasmodium berghei genomes

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This project is a component of the Sequence data and draft assemblies and annotation for a set of rodent malaria species.

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7 additional projects are components of the Sequence data and draft assemblies and annotation for a set of rodent malaria species..

We generated genome assemblies for 4 Plasmodium chabaudi and 5. Plasmodium berghei samples to analyse better the diversity of the genome and the genome families. The genomes are draft assembled and automatically annotated and will contain potential errors.

Accession	PRJEB11993
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Submission	Registration date: 4-Dec-2015 WELLCOME SANGER INSTITUTE
Locus Tag Prefix	PCHDS

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	2746
WGS master	9
Genomic DNA	134
Protein Sequences	45626
Other datasets
BioSample	9
Assembly	9

Assembly details:

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Assembly level

Number of Assemblies

Chromosome

Total

9
9

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_900095585.1	FMIH00000000	16	SAMEA1323895	SP11 RLL	Plasmodium berghei
GCA_900095635.1	FMII00000000	16	SAMEA1323894	SP11 Antwerpcl1	Plasmodium berghei
GCA_900088445.1	FLVA00000000	16	SAMEA1323893	NK65e	Plasmodium berghei
GCA_900044335.1	FFUQ00000000	14	SAMEA666351	K173	Plasmodium berghei
GCA_900095545.1	FMIE00000000	16	SAMEA1323892	NK65 ny	Plasmodium berghei
GCA_900095605.1	FMIM00000000	14	SAMEA858185	CB	Plasmodium chabaudi chabaudi
GCA_900095565.1	FMIO00000000	14	SAMEA858183	DK	Plasmodium chabaudi adami
GCA_900095555.1	FMIL00000000	14	SAMEA858189	AJ	Plasmodium chabaudi chabaudi
GCA_900095625.1	FMIN00000000	14	SAMEA858181	DS	Plasmodium chabaudi adami

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LinkOut to external resources

GOLD: 9 Sequencing Projects [Genomes On Line Database]
GOLD: 9 Sequencing Projects
Genomes On Line Database
2811995137: Plasmodium berghei SP11 RLL [Integrated Microbial Genomes]
2811995137: Plasmodium berghei SP11 RLL
Integrated Microbial Genomes
2739368117: Plasmodium berghei K173 [Integrated Microbial Genomes]
2739368117: Plasmodium berghei K173
Integrated Microbial Genomes
2811995138: Plasmodium berghei NK65e [Integrated Microbial Genomes]
2811995138: Plasmodium berghei NK65e
Integrated Microbial Genomes

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Genomes of P. chabaudi and P. berghei
Genomes of P. chabaudi and P. berghei
Draft assembly and annotation of Plasmodium chabaudi and Plasmodium berghei genomes

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