mixed sample (ID 343143) - BioProject

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Accession: PRJNA343143 ID: 343143

mixed sample

Mixture of 8 species: Escherichia coli MG1655, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides vulgatus ATCC 8492, Collinsella aerofaciens ATCC 25986, Clostridium bolteae ATCC BAA-613, a

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This project is a component of the Multi-species bacterial DNA sequencing in support of DNA methylation binning and plasmid mapping in metagenomic samples

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6 additional projects are components of the Multi-species bacterial DNA sequencing in support of DNA methylation binning and plasmid mapping in metagenomic samples.

The goal is to evaluate different metagenomic binning methods with a mock community with background truth. More...

Accession	PRJNA343143
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	mixed sample[Taxonomy ID: 1427524] unclassified sequences; mixed sample
Publications	Beaulaurier J et al., "Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation.", Nat Biotechnol, 2018 Jan;36(1):61-69
Submission	Registration date: 6-Nov-2017 Mount Sinai School of Medicine

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	97
WGS master	7
Genomic DNA	1
SRA Experiments	1
Protein Sequences	31162
Publications
PubMed	1
PMC	1
Other datasets
BioSample	9
Assembly	8

Assembly details:

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Assembly level

Number of Assemblies

1
1
6
8

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_002959715.1	PUEQ00000000		SAMN08570051	ATCC 43185	Bacteroides caccae
GCA_002959635.1	PUEP00000000		SAMN08570052	ATCC 8483	Bacteroides ovatus
GCA_002959695.1	PUEO00000000		SAMN08570053	VPI-5482	Bacteroides thetaiotaomicron
GCA_002959675.1	PUEM00000000		SAMN08570056	ATCC BAA-613	Enterocloster bolteae
GCA_002966145.1		1	SAMN08570057	K-12	Escherichia coli str. K-12 substr. MG1655
GCA_002959615.1	PUEL00000000		SAMN08570058	ATCC 29149	Mediterraneibacter gnavus ATCC 29149
GCA_002959625.1	PUEN00000000		SAMN08570054	ATCC 8492	Phocaeicola vulgatus
GCA_002754765.1	PDZQ00000000		SAMN05780989	-	mixed sample

SRA Data Details

Parameter	Value
Data volume, Gbases	13
Data volume, Mbytes	47847

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mixed sample

Mixture of 8 species: Escherichia coli MG1655, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides vulgatus ATCC 8492, Collinsella aerofaciens ATCC 25986, Clostridium bolteae ATCC BAA-613, a

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