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Accession: PRJNA342349 ID: 342349

Staphylococcus

Comprehensive Phylogenetic Analysis of Bovine Coagulase-Negative Staphylococci Species Based on Whole Genome Sequencing

A large number of Staphylococcal genomes are sequenced to determine their role in Canadian dairy herds.
AccessionPRJNA342349
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismStaphylococcus[Taxonomy ID: 1279]
Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus
PublicationsNaushad S et al., "Comprehensive Phylogenetic Analysis of Bovine Non-aureus Staphylococci Species Based on Whole-Genome Sequencing.", Front Microbiol, 2016;7:1990
SubmissionRegistration date: 5-Apr-2018
University of Calgary
RelevanceEvolution
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)89914
WGS master441
Protein Sequences1086042
Publications
PubMed1
PMC1
Other datasets
BioSample441
Assembly441
Assembly details:
Assembly levelNumber of Assemblies
440
440
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_003577995.1ContigQXSE00000000SAMN06173023
SNUC 182
GCA_003035045.1ContigPYYE00000000SAMN06173024
SNUC 248
GCA_003580435.1ContigQYJF00000000SAMN06173121
SNUC 1043
GCA_003580425.1ContigQXVC00000000SAMN06173129
SNUC 1516
GCA_003580395.1ContigQXVB00000000SAMN06173130
SNUC 1679
GCA_003580375.1ContigQYIX00000000SAMN06173134
SNUC 2754
GCA_003580365.1ContigQYIW00000000SAMN06173137
SNUC 3363
GCA_003580695.1ContigQYJE00000000SAMN06173122
SNUC 1323
GCA_003580685.1ContigQYIY00000000SAMN06173133
SNUC 2430
GCA_003580455.1ContigQXVD00000000SAMN06173115
SNUC 174
GCA_003579465.1ContigQYJD00000000SAMN06173123
SNUC 1326
GCA_003579395.1ContigQXVA00000000SAMN06173135
SNUC 2936
GCA_003579445.1ContigQYJC00000000SAMN06173124
SNUC 1345
GCA_003579425.1ContigQYIZ00000000SAMN06173132
SNUC 2103
GCA_003579375.1ContigQXUZ00000000SAMN06173141
SNUC 5174
GCA_003579605.1ContigQYJG00000000SAMN06173118
SNUC 275
GCA_003579575.1ContigQYJB00000000SAMN06173125
SNUC 1352
GCA_003579565.1ContigQYJA00000000SAMN06173126
SNUC 1353
GCA_003043615.1ContigPZHE00000000SAMN06173119
SNUC 740
GCA_003043075.1ContigPZGZ00000000SAMN06173136
SNUC 3120
GCA_003042855.1ContigPZHA00000000SAMN06173131
SNUC 1760
GCA_003042195.1ContigPZHF00000000SAMN06173117
SNUC 225
GCA_003042135.1ContigPZGW00000000SAMN06173140
SNUC 4659
GCA_003042145.1ContigPZHG00000000SAMN06173116
SNUC 209
GCA_003041945.1ContigPZHB00000000SAMN06173128
SNUC 1403
GCA_003041935.1ContigPZHH00000000SAMN06173114
SNUC 70
GCA_003041915.1ContigPZHC00000000SAMN06173127
SNUC 1372
GCA_003041875.1ContigPZGX00000000SAMN06173139
SNUC 4210
GCA_003041895.1ContigPZGY00000000SAMN06173138
SNUC 3899
GCA_003041855.1ContigPZGV00000000SAMN06173142
SNUC 5594
GCA_003041975.1ContigPZHD00000000SAMN06173120
SNUC 1020
GCA_003041615.1ContigPZFG00000000SAMN06173203
SNUC 2436
GCA_003043275.1ContigPZFF00000000SAMN06173204
SNUC 2780
GCA_003043335.1ContigPZFL00000000SAMN06173201
SNUC 730
GCA_003043315.1ContigPZFK00000000SAMN06173202
SNUC 2204
GCA_003579225.1ContigQXTN00000000SAMN06173205
SNUC 4525
GCA_003578985.1ContigQXTO00000000SAMN06173200
SNUC 430
GCA_003041195.1ContigPZDW00000000SAMN06172820
SNUC 3836
GCA_003041215.1ContigPZEA00000000SAMN06172816
SNUC 2265
GCA_003040995.1ContigPZED00000000SAMN06172813
SNUC 725
GCA_003041015.1ContigPZEE00000000SAMN06172812
SNUC 719
GCA_003040965.1ContigPZEC00000000SAMN06172814
SNUC 1371
GCA_003040955.1ContigPZEB00000000SAMN06172815
SNUC 1383
GCA_003040935.1ContigPZDZ00000000SAMN06172817
SNUC 2493
GCA_003040915.1ContigPZDY00000000SAMN06172818
SNUC 3261
GCA_003040875.1ContigPZDV00000000SAMN06172821
SNUC 4051
GCA_003040895.1ContigPZDX00000000SAMN06172819
SNUC 3610
GCA_003040855.1ContigPZDU00000000SAMN06172822
SNUC 5631
GCA_003040835.1ContigPZDT00000000SAMN06172823
SNUC 4805
GCA_003040805.1ContigPZDS00000000SAMN06172824
SNUC 5151
GCA_003579095.1ContigQXRT00000000SAMN06172837
SNUC 5134
GCA_003578715.1ContigQXRY00000000SAMN06172826
SNUC 1401
GCA_003578705.1ContigQXRX00000000SAMN06172827
SNUC 1480
GCA_003578655.1ContigQXRV00000000SAMN06172833
SNUC 4202
GCA_003578665.1ContigQXRW00000000SAMN06172831
SNUC 3131
GCA_003578645.1ContigQXRU00000000SAMN06172836
SNUC 4935
GCA_003040755.1ContigPZDK00000000SAMN06172838
SNUC 1715.2
GCA_003040735.1ContigPZDJ00000000SAMN06172839
SNUC 4786
GCA_003040775.1ContigPZDL00000000SAMN06172835
SNUC 4426
GCA_003040795.1ContigPZDR00000000SAMN06172825
SNUC 1330
GCA_003041175.1ContigPZDQ00000000SAMN06172828
SNUC 1576
GCA_003041135.1ContigPZDP00000000SAMN06172829
SNUC 2101
GCA_003041155.1ContigPZDO00000000SAMN06172830
SNUC 3029
GCA_003041095.1ContigPZDM00000000SAMN06172834
SNUC 4292
GCA_003041115.1ContigPZDN00000000SAMN06172832
SNUC 3447
GCA_003040715.1ContigPZDI00000000SAMN06172840
SNUC 993
GCA_003040695.1ContigPZDH00000000SAMN06172841
SNUC 3034
GCA_003042555.1ContigPZIO00000000SAMN06173058
SNUC 1342
GCA_003580835.1ContigQYJM00000000SAMN06173047
SNUC 119
GCA_003578625.1ContigQXRS00000000SAMN06172843
SNUC 807
GCA_003578595.1ContigQXRR00000000SAMN06172846
SNUC 1319
GCA_003579085.1ContigQXRQ00000000SAMN06172847
SNUC 1642
GCA_003579065.1ContigQXRP00000000SAMN06172850
SNUC 2643
GCA_003578355.1ContigQXRL00000000SAMN06172862
SNUC 5893
GCA_003578415.1ContigQXRO00000000SAMN06172853
SNUC 3357
GCA_003578405.1ContigQXRN00000000SAMN06172856
SNUC 3795
GCA_003578385.1ContigQXRM00000000SAMN06172860
SNUC 4830
GCA_003040675.1ContigPZDF00000000SAMN06172844
SNUC 895
GCA_003041075.1ContigPZDG00000000SAMN06172842
SNUC 791
GCA_003041055.1ContigPZDA00000000SAMN06172852
SNUC 2974
GCA_003041035.1ContigPZDC00000000SAMN06172849
SNUC 2477
GCA_003040655.1ContigPZDE00000000SAMN06172845
SNUC 1187
GCA_003040635.1ContigPZDD00000000SAMN06172848
SNUC 2159
GCA_003040615.1ContigPZDB00000000SAMN06172851
SNUC 2784
GCA_003040595.1ContigPZCZ00000000SAMN06172854
SNUC 3379
GCA_003040575.1ContigPZCY00000000SAMN06172855
SNUC 3769
GCA_003040555.1ContigPZCW00000000SAMN06172858
SNUC 4275
GCA_003040535.1ContigPZCV00000000SAMN06172859
SNUC 4705
GCA_003039875.1ContigPZCU00000000SAMN06172861
SNUC 5871
GCA_003039895.1ContigPZCX00000000SAMN06172857
SNUC 4231
GCA_003039855.1ContigPZCT00000000SAMN06172863
SNUC 6079
GCA_003578345.1ContigQXRK00000000SAMN06172864
SNUC 4023
GCA_003040115.1ContigPZAH00000000SAMN06172924
SNUC 2004
GCA_003040095.1ContigPZAG00000000SAMN06172925
SNUC 2109
GCA_003040035.1ContigPZBH00000000SAMN06172945
SNUC 6071
GCA_003040055.1ContigPYZU00000000SAMN06172939
SNUC 4613
GCA_003040075.1ContigPZAD00000000SAMN06172929
SNUC 2487
GCA_003040275.1ContigPZBM00000000SAMN06172902
SNUC 1339
GCA_003040295.1ContigPZBO00000000SAMN06172900
SNUC 1321
GCA_003040255.1ContigPZAR00000000SAMN06172906
SNUC 1350
GCA_003040235.1ContigPZAQ00000000SAMN06172907
SNUC 1351
GCA_003040195.1ContigPZAO00000000SAMN06172909
SNUC 1363
GCA_003040215.1ContigPZAP00000000SAMN06172908
SNUC 1362
GCA_003040135.1ContigPZAI00000000SAMN06172920
SNUC 1445
GCA_003040175.1ContigPZAM00000000SAMN06172912
SNUC 1374
GCA_003040155.1ContigPZAL00000000SAMN06172915
SNUC 1381
GCA_003040495.1ContigPZCP00000000SAMN06172868
SNUC 65
GCA_003040515.1ContigPZCS00000000SAMN06172865
SNUC 4
GCA_003040315.1ContigPZBQ00000000SAMN06172898
SNUC 1261
GCA_003040335.1ContigPZBS00000000SAMN06172895
SNUC 1063
GCA_003040355.1ContigPZBW00000000SAMN06172890
SNUC 803
GCA_003040375.1ContigPZCA00000000SAMN06172883
SNUC 277
GCA_003040475.1ContigPZCO00000000SAMN06172869
SNUC 91
GCA_003040415.1ContigPZCG00000000SAMN06172877
SNUC 132
GCA_003040455.1ContigPZCL00000000SAMN06172872
SNUC 107
GCA_003040435.1ContigPZCH00000000SAMN06172876
SNUC 129
GCA_003040395.1ContigPZCF00000000SAMN06172878
SNUC 133
GCA_003043035.1ContigPZCR00000000SAMN06172866
SNUC 6
GCA_003040015.1ContigPZBG00000000SAMN06172946
SNUC 1015.1
GCA_003039455.1ContigPZBN00000000SAMN06172901
SNUC 1328
GCA_003039435.1ContigPZAK00000000SAMN06172918
SNUC 1405
GCA_003039795.1ContigPZCM00000000SAMN06172871
SNUC 105
GCA_003039835.1ContigPZCQ00000000SAMN06172867
SNUC 24
GCA_003039815.1ContigPZCN00000000SAMN06172870
SNUC 104
GCA_003039775.1ContigPZCK00000000SAMN06172873
SNUC 110
GCA_003039755.1ContigPZCJ00000000SAMN06172874
SNUC 114
GCA_003039735.1ContigPZCI00000000SAMN06172875
SNUC 126
GCA_003039655.1ContigPZCB00000000SAMN06172882
SNUC 265
GCA_003039715.1ContigPZCE00000000SAMN06172879
SNUC 134
GCA_003039675.1ContigPZCC00000000SAMN06172881
SNUC 255
GCA_003039695.1ContigPZCD00000000SAMN06172880
SNUC 235
GCA_003039615.1ContigPZBY00000000SAMN06172887
SNUC 544
GCA_003039635.1ContigPZBZ00000000SAMN06172886
SNUC 505
GCA_003039595.1ContigPZBX00000000SAMN06172889
SNUC 744
GCA_003039575.1ContigPZBV00000000SAMN06172891
SNUC 859
GCA_003039535.1ContigPZBT00000000SAMN06172894
SNUC 1062
GCA_003039555.1ContigPZBU00000000SAMN06172892
SNUC 1015
GCA_003039515.1ContigPZBR00000000SAMN06172896
SNUC 1139
GCA_003039495.1ContigPZBP00000000SAMN06172899
SNUC 1318
GCA_003036405.1ContigPZBL00000000SAMN06172903
SNUC 1341
GCA_003036375.1ContigPZAN00000000SAMN06172910
SNUC 1369
GCA_003036365.1ContigPZAS00000000SAMN06172904
SNUC 1344
GCA_003036345.1ContigPZAJ00000000SAMN06172919
SNUC 1415
GCA_003036325.1ContigPZAF00000000SAMN06172926
SNUC 2458
GCA_003036305.1ContigPZAE00000000SAMN06172927
SNUC 2460
GCA_003036285.1ContigPZAC00000000SAMN06172930
SNUC 2579
GCA_003036215.1ContigPZAB00000000SAMN06172931
SNUC 2899
GCA_003036185.1ContigPYZX00000000SAMN06172936
SNUC 4042
GCA_003036155.1ContigPYZW00000000SAMN06172937
SNUC 4192
GCA_003036135.1ContigPYZV00000000SAMN06172938
SNUC 4199
GCA_003036125.1ContigPYZT00000000SAMN06172940
SNUC 4619
GCA_003036105.1ContigPYZS00000000SAMN06172941
SNUC 5079
GCA_003036085.1ContigPZBJ00000000SAMN06172943
SNUC 5978
GCA_003036065.1ContigPZBK00000000SAMN06172942
SNUC 5084
GCA_003036265.1ContigPZAA00000000SAMN06172932
SNUC 3095
GCA_003036245.1ContigPYZZ00000000SAMN06172933
SNUC 3611
GCA_003036205.1ContigPYZY00000000SAMN06172934
SNUC 3885
GCA_003036025.1ContigPZBF00000000SAMN06172947
SNUC 4584
GCA_003036035.1ContigPZBI00000000SAMN06172944
SNUC 5997
GCA_003578435.1ContigQXQU00000000SAMN06172935
SNUC 3912
GCA_003578325.1ContigQXRH00000000SAMN06172888
SNUC 578
GCA_003578285.1ContigQXRB00000000SAMN06172914
SNUC 1379
GCA_003578295.1ContigQXRD00000000SAMN06172911
SNUC 1373
GCA_003578265.1ContigQXRA00000000SAMN06172916
SNUC 1386
GCA_003578225.1ContigQXQY00000000SAMN06172921
SNUC 1508
GCA_003578215.1ContigQXQX00000000SAMN06172922
SNUC 1603
GCA_003578175.1ContigQXQV00000000SAMN06172928
SNUC 2476
GCA_003578185.1ContigQXQW00000000SAMN06172923
SNUC 1776
GCA_003578545.1ContigQXRI00000000SAMN06172885
SNUC 429
GCA_003578535.1ContigQXRG00000000SAMN06172893
SNUC 1031
GCA_003578485.1ContigQXRC00000000SAMN06172913
SNUC 1376
GCA_003578495.1ContigQXRE00000000SAMN06172905
SNUC 1348
GCA_003578465.1ContigQXQZ00000000SAMN06172917
SNUC 1387
GCA_003578585.1ContigQXRJ00000000SAMN06172884
SNUC 335
GCA_003578525.1ContigQXRF00000000SAMN06172897
SNUC 1158
GCA_003035905.1ContigPZAU00000000SAMN06172960
SNUC 2486
GCA_003035925.1ContigPZAV00000000SAMN06172959
SNUC 2341
GCA_003035865.1ContigPYZR00000000SAMN06172964
SNUC 3829
GCA_003035875.1ContigPZAT00000000SAMN06172961
SNUC 2659
GCA_003036005.1ContigPZBE00000000SAMN06172948
SNUC 5
GCA_003035965.1ContigPZAZ00000000SAMN06172955
SNUC 1120
GCA_003035975.1ContigPZBB00000000SAMN06172951
SNUC 1036
GCA_003035945.1ContigPZBD00000000SAMN06172949
SNUC 156
GCA_003035785.1ContigPYZO00000000SAMN06172970
SNUC 5656
GCA_003035835.1ContigPYZN00000000SAMN06172971
SNUC 5710
GCA_003035505.1ContigPYZQ00000000SAMN06172966
SNUC 4640
GCA_003035485.1ContigPYZP00000000SAMN06172968
SNUC 5124
GCA_003039915.1ContigPZAW00000000SAMN06172958
SNUC 2129
GCA_003039995.1ContigPZBC00000000SAMN06172950
SNUC 969
GCA_003039975.1ContigPZBA00000000SAMN06172954
SNUC 1091
GCA_003039955.1ContigPZAY00000000SAMN06172956
SNUC 1322
GCA_003039935.1ContigPZAX00000000SAMN06172957
SNUC 1638
GCA_003577915.1ContigQXSY00000000SAMN06172965
SNUC 4556
GCA_003578125.1ContigQXTB00000000SAMN06172953
SNUC 1071
GCA_003578165.1ContigQXTC00000000SAMN06172952
SNUC 1067
GCA_003577955.1ContigQXTA00000000SAMN06172962
SNUC 3213
GCA_003577935.1ContigQXSZ00000000SAMN06172963
SNUC 3536
GCA_003577905.1ContigQXSX00000000SAMN06172967
SNUC 4643
GCA_003577875.1ContigQXSW00000000SAMN06172969
SNUC 5133
GCA_003035465.1ContigPYZL00000000SAMN06172974
SNUC 761
GCA_003035445.1ContigPYZJ00000000SAMN06172976
SNUC 1316
GCA_003035825.1ContigPYZM00000000SAMN06172972
SNUC 593
GCA_003035765.1ContigPYZI00000000SAMN06172977
SNUC 1409
GCA_003035795.1ContigPYZK00000000SAMN06172975
SNUC 1156
GCA_003035725.1ContigPYZH00000000SAMN06172978
SNUC 4143
GCA_003578105.1ContigQXSU00000000SAMN06172979
SNUC 4438
GCA_003578115.1ContigQXSV00000000SAMN06172973
SNUC 760
GCA_003035705.1ContigPYYT00000000SAMN06172998
SNUC 3868
GCA_003035685.1ContigPYYS00000000SAMN06172999
SNUC 4029
GCA_003035745.1ContigPYYX00000000SAMN06172993
SNUC 2450
GCA_003035645.1ContigPYYR00000000SAMN06173001
SNUC 5038
GCA_003035425.1ContigPYZG00000000SAMN06172980
SNUC 29
GCA_003035325.1ContigPYZA00000000SAMN06172987
SNUC 1357
GCA_003035305.1ContigPYZB00000000SAMN06172986
SNUC 1329
GCA_003035275.1ContigPYYY00000000SAMN06172992
SNUC 2400
GCA_003035245.1ContigPYYW00000000SAMN06172994
SNUC 2473
GCA_003035225.1ContigPYYV00000000SAMN06172995
SNUC 2538
GCA_003035205.1ContigPYYU00000000SAMN06172996
SNUC 2569
GCA_003035185.1ContigPYYQ00000000SAMN06173005
SNUC 901.1
GCA_003035405.1ContigPYZF00000000SAMN06172981
SNUC 75
GCA_003035385.1ContigPYZE00000000SAMN06172983
SNUC 258
GCA_003035365.1ContigPYZD00000000SAMN06172984
SNUC 291
GCA_003035255.1ContigPYYZ00000000SAMN06172990
SNUC 1778
GCA_003035345.1ContigPYZC00000000SAMN06172985
SNUC 1209
GCA_003578055.1ContigQXSN00000000SAMN06173002
SNUC 5600
GCA_003578045.1ContigQXSL00000000SAMN06173004
SNUC 5996
GCA_003578065.1ContigQXSR00000000SAMN06172989
SNUC 1400
GCA_003577845.1ContigQXSS00000000SAMN06172988
SNUC 1378
GCA_003577825.1ContigQXSQ00000000SAMN06172991
SNUC 1856
GCA_003577775.1ContigQXSO00000000SAMN06173000
SNUC 4204
GCA_003577785.1ContigQXSP00000000SAMN06172997
SNUC 3608
GCA_003577745.1ContigQXSM00000000SAMN06173003
SNUC 5677
GCA_003577865.1ContigQXST00000000SAMN06172982
SNUC 170
GCA_003577715.1ContigQXSJ00000000SAMN06173010
SNUC 284
GCA_003578015.1ContigQXSG00000000SAMN06173016
SNUC 1937
GCA_003577735.1ContigQXSK00000000SAMN06173006
SNUC 115
GCA_003577685.1ContigQXSH00000000SAMN06173014
SNUC 1023
GCA_003577655.1ContigQXSF00000000SAMN06173018
SNUC 2835
GCA_003035525.1ContigPYYH00000000SAMN06173020
SNUC 4019
GCA_003035615.1ContigPYYJ00000000SAMN06173017
SNUC 2121
GCA_003035585.1ContigPYYK00000000SAMN06173015
SNUC 1644
GCA_003035595.1ContigPYYM00000000SAMN06173011
SNUC 476
GCA_003035555.1ContigPYYI00000000SAMN06173019
SNUC 3944
GCA_003035665.1ContigPYYN00000000SAMN06173009
SNUC 193
GCA_003035085.1ContigPYYF00000000SAMN06173022
SNUC 5082
GCA_003035055.1ContigPYYG00000000SAMN06173021
SNUC 5474
GCA_003035145.1ContigPYYL00000000SAMN06173013
SNUC 742
GCA_003035125.1ContigPYYO00000000SAMN06173008
SNUC 144
GCA_003035165.1ContigPYYP00000000SAMN06173007
SNUC 116
GCA_003577625.1ContigQXSB00000000SAMN06173028
SNUC 1046
GCA_003577645.1ContigQXSC00000000SAMN06173027
SNUC 741
GCA_003577565.1ContigQXRZ00000000SAMN06173031
SNUC 1388
GCA_003577605.1ContigQXSA00000000SAMN06173029
SNUC 1169
GCA_003577975.1ContigQXSD00000000SAMN06173025
SNUC 302
GCA_003579765.1ContigQYJS00000000SAMN06173034
SNUC 2094
GCA_003579735.1ContigQYJO00000000SAMN06173041
SNUC 4633
GCA_003579725.1ContigQYJR00000000SAMN06173036
SNUC 2913
GCA_003580875.1ContigQYJQ00000000SAMN06173037
SNUC 3067
GCA_003580865.1ContigQXVM00000000SAMN06173032
SNUC 1606
GCA_003579685.1ContigQYJN00000000SAMN06173044
SNUC 4781
GCA_003580935.1ContigQYJP00000000SAMN06173040
SNUC 4583
GCA_003580925.1ContigQXVL00000000SAMN06173042
SNUC 5344
GCA_003035095.1ContigPYYC00000000SAMN06173030
SNUC 1244
GCA_003035515.1ContigPYYD00000000SAMN06173026
SNUC 395
GCA_003042895.1ContigPZJD00000000SAMN06173035
SNUC 2111
GCA_003042735.1ContigPZJB00000000SAMN06173039
SNUC 4236
GCA_003042715.1ContigPZIZ00000000SAMN06173045
SNUC 4861
GCA_003042655.1ContigPZJE00000000SAMN06173033
SNUC 2087
GCA_003042635.1ContigPZJA00000000SAMN06173043
SNUC 5382
GCA_003043855.1ContigPZJC00000000SAMN06173038
SNUC 4089
GCA_003043815.1ContigPZIX00000000SAMN06173048
SNUC 123
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