human gut metagenome (ID 397219) - BioProject

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Accession: PRJNA397219 ID: 397219

human gut metagenome

Gut metagenomes of patients with colorectal cancer

We sequenced the gut metagenomes of patients with colorectal cancer, together age- and sex-matched controls. More...

Accession	PRJNA397219
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	human gut metagenome[Taxonomy ID: 408170] unclassified sequences; metagenomes; organismal metagenomes; human gut metagenome
Publications	Hale VL et al., "Synthesis of multi-omic data and community metabolic models reveals insights into the role of hydrogen sulfide in colon cancer.", Methods, 2018 Oct 1;149:59-68
Grants	"Microbial Metabolic Toxicity Drives Colon Cancer" (Grant ID R01 CA179243, National Cancer Institute)
Submission	Registration date: 23-May-2018 Mayo Clinic
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	6208
WGS master	85
SRA Experiments	88
Protein Sequences	160244
Publications
PubMed	1
PMC	1
Other datasets
BioSample	107
Assembly	85

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

83
2
85

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_003149895.1	QAMN00000000	SAMN08295026	CIM:MAG 740	Amedibacillus dolichus
GCA_003150955.1	QALJ00000000	SAMN08294996	CIM:MAG 289	Azospirillum sp.
GCA_003150225.1	QAND00000000	SAMN08295042	CIM:MAG 959	Bacillota bacterium
GCA_003149915.1	QAMK00000000	SAMN08295023	CIM:MAG 721	Bacillota bacterium
GCA_003343995.1	QAKE00000000	SAMN08294965	CIM:MAG 1059	Bacillota bacterium
GCA_003343805.1	QAKM00000000	SAMN08294973	CIM:MAG 1227	Bacillota bacterium
GCA_003343765.1	QAKO00000000	SAMN08294975	CIM:MAG 1237	Bacillota bacterium
GCA_003150235.1	QAMW00000000	SAMN08295035	CIM:MAG 858	Bacteroidales bacterium
GCA_003150395.1	QAMI00000000	SAMN08295021	CIM:MAG 683	Candidatus Gastranaerophilales bacterium
GCA_003150375.1	QAMG00000000	SAMN08295019	CIM:MAG 635	Clostridia bacterium
GCA_003149965.1	QAMF00000000	SAMN08295018	CIM:MAG 611	Clostridia bacterium
GCA_003343735.1	QAKP00000000	SAMN08294976	CIM:MAG 1244_1	Clostridia bacterium
GCA_003343525.1	QALG00000000	SAMN08294993	CIM:MAG 232	Clostridia bacterium
GCA_003343465.1	QALH00000000	SAMN08294994	CIM:MAG 26	Clostridia bacterium
GCA_003343915.1	QAKG00000000	SAMN08294967	CIM:MAG 110_1	Clostridia bacterium
GCA_003149875.1	QAMO00000000	SAMN08295027	CIM:MAG 755	Clostridiaceae bacterium
GCA_003150195.1	QANE00000000	SAMN08295043	CIM:MAG 987	Clostridiaceae bacterium
GCA_003343965.1	QAKD00000000	SAMN08294964	CIM:MAG 1057	Clostridiales Family XIII bacterium
GCA_003343885.1	QAKH00000000	SAMN08294968	CIM:MAG 1102	Clostridiales bacterium
GCA_003343445.1	QALL00000000	SAMN08294998	CIM:MAG 309	Clostridiales bacterium
GCA_003343815.1	QAKL00000000	SAMN08294972	CIM:MAG 1201	Clostridiales bacterium
GCA_003343705.1	QAKR00000000	SAMN08294978	CIM:MAG 1312	Clostridiales bacterium
GCA_003343685.1	QAKS00000000	SAMN08294979	CIM:MAG 1314	Clostridiales bacterium
GCA_003343635.1	QAKU00000000	SAMN08294981	CIM:MAG 1355	Clostridiales bacterium
GCA_003343625.1	QAKV00000000	SAMN08294982	CIM:MAG 1386	Clostridiales bacterium
GCA_003343645.1	QAKT00000000	SAMN08294980	CIM:MAG 131	Clostridiales bacterium
GCA_003343605.1	QAKW00000000	SAMN08294983	CIM:MAG 1396	Clostridiales bacterium
GCA_003343475.1	QALI00000000	SAMN08294995	CIM:MAG 272	Clostridiales bacterium
GCA_003150145.1	QANG00000000	SAMN08295045	CIM:MAG 998	Clostridiales bacterium
GCA_003150115.1	QALC00000000	SAMN08294989	CIM:MAG 1534	Clostridiales bacterium
GCA_003150355.1	QAMJ00000000	SAMN08295022	CIM:MAG 701	Clostridiales bacterium
GCA_003150405.1	QAMM00000000	SAMN08295025	CIM:MAG 739_1	Clostridiales bacterium
GCA_003150645.1	QALM00000000	SAMN08294999	CIM:MAG 317_1	Clostridiales bacterium
GCA_003150565.1	QALT00000000	SAMN08295006	CIM:MAG 442	Clostridiales bacterium
GCA_003150575.1	QALS00000000	SAMN08295005	CIM:MAG 424	Clostridiales bacterium
GCA_003150545.1	QALU00000000	SAMN08295007	CIM:MAG 451	Clostridiales bacterium
GCA_003150435.1	QAMC00000000	SAMN08295015	CIM:MAG 563	Clostridiales bacterium
GCA_003150485.1	QALX00000000	SAMN08295010	CIM:MAG 491	Clostridiales bacterium
GCA_003149835.1	QAMX00000000	SAMN08295036	CIM:MAG 868	Clostridiales bacterium
GCA_003150035.1	QALR00000000	SAMN08295004	CIM:MAG 413	Clostridiales bacterium
GCA_003150015.1	QALV00000000	SAMN08295008	CIM:MAG 45	Clostridiales bacterium
GCA_003150215.1	QANB00000000	SAMN08295040	CIM:MAG 925	Clostridiales bacterium
GCA_003150055.1	QALQ00000000	SAMN08295003	CIM:MAG 404	Clostridiales bacterium
GCA_003149735.1	QANA00000000	SAMN08295039	CIM:MAG 912	Clostridiales bacterium
GCA_003149765.1	QAMZ00000000	SAMN08295038	CIM:MAG 903	Clostridium cadaveris
GCA_003150745.1	QANC00000000	SAMN08295041	CIM:MAG 941	Clostridium sp.
GCA_003343495.1	QALK00000000	SAMN08294997	CIM:MAG 294	Collinsella tanakaei
GCA_003150735.1	QAMQ00000000	SAMN08295029	CIM:MAG 770	Coprobacillus sp.
GCA_003150065.1	QALP00000000	SAMN08295002	CIM:MAG 335	Coprobacter fastidiosus
GCA_003150885.1	QAMD00000000	SAMN08295016	CIM:MAG 570	Coprobacter sp.
GCA_003343725.1	QAKQ00000000	SAMN08294977	CIM:MAG 1296_1	Coriobacteriia bacterium
GCA_003343785.1	QAKN00000000	SAMN08294974	CIM:MAG 1229	Coriobacteriia bacterium
GCA_003150175.1	QAKZ00000000	SAMN08294986	CIM:MAG 1422	Coriobacteriia bacterium
GCA_003149935.1	QAMH00000000	SAMN08295020	CIM:MAG 663_1	Coriobacteriia bacterium
GCA_003343975.1	QAKC00000000	SAMN08294963	CIM:MAG 1040	Desulfovibrionaceae bacterium
GCA_003150275.1	QAMY00000000	SAMN08295037	CIM:MAG 900	Desulfovibrionaceae bacterium
GCA_003343865.1	QAKJ00000000	SAMN08294970	CIM:MAG 1144	Dielma fastidiosa
GCA_003150475.1	QALY00000000	SAMN08295011	CIM:MAG 532	Eggerthellales bacterium
GCA_003149995.1	QAMB00000000	SAMN08295014	CIM:MAG 560	Escherichia coli
GCA_003150605.1	QALO00000000	SAMN08295001	CIM:MAG 328	Eubacterium ventriosum
GCA_003150615.1	QALN00000000	SAMN08295000	CIM:MAG 32_1	Flavobacteriales bacterium
GCA_003150445.1	QAMA00000000	SAMN08295013	CIM:MAG 54	Lachnospiraceae bacterium
GCA_003150295.1	QAMU00000000	SAMN08295033	CIM:MAG 844	Lachnospiraceae bacterium
GCA_003343945.1	QAKF00000000	SAMN08294966	CIM:MAG 1073	Lentisphaerota bacterium
GCA_003343585.1	QAKY00000000	SAMN08294985	CIM:MAG 1415	Limosilactobacillus fermentum
GCA_003151015.1	QAKA00000000	SAMN08294961	CIM:MAG 1013	Massilioclostridium sp.
GCA_003150995.1	QALE00000000	SAMN08294991	CIM:MAG 164_1	Oscillibacter sp.
GCA_003344025.1	QAKB00000000	SAMN08294962	CIM:MAG 1028_2	Oscillospiraceae bacterium
GCA_003343545.1	QALB00000000	SAMN08294988	CIM:MAG 148	Oscillospiraceae bacterium
GCA_003343845.1	QAKK00000000	SAMN08294971	CIM:MAG 1170_1	Oscillospiraceae bacterium
GCA_003150075.1	QALD00000000	SAMN08294990	CIM:MAG 1613	Oscillospiraceae bacterium
GCA_003150135.1	QAKX00000000	SAMN08294984	CIM:MAG 1403	Oscillospiraceae bacterium
GCA_003149955.1	QAME00000000	SAMN08295017	CIM:MAG 577	Oscillospiraceae bacterium
GCA_003149855.1	QAMV00000000	SAMN08295034	CIM:MAG 846	Oscillospiraceae bacterium
GCA_003150755.1	QAMT00000000	SAMN08295032	CIM:MAG 843_2	Phascolarctobacterium sp.
GCA_003150315.1	QAML00000000	SAMN08295024	CIM:MAG 724	Prevotellaceae bacterium
GCA_003150975.1	QALF00000000	SAMN08294992	CIM:MAG 1675	Propionibacterium sp.
GCA_003150895.1	QALZ00000000	SAMN08295012	CIM:MAG 545	Ruminococcus sp.
GCA_003150515.1	QALW00000000	SAMN08295009	CIM:MAG 469	Selenomonadales bacterium
GCA_003150875.1	QAMP00000000	SAMN08295028	CIM:MAG 76	Subdoligranulum sp.
GCA_003343905.1	QAKI00000000	SAMN08294969	CIM:MAG 1127	Subdoligranulum variabile
GCA_003173675.1	QAMS00000000	SAMN08295031	CIM:MAG 824	Succinivibrio sp.
GCA_003149785.1	QANF00000000	SAMN08295044	CIM:MAG 989	Veillonellaceae bacterium
GCA_003343565.1	QALA00000000	SAMN08294987	CIM:MAG 1451	Verrucomicrobiota bacterium
GCA_003150305.1	QAMR00000000	SAMN08295030	CIM:MAG 792_1	Verrucomicrobiota bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	2,257
Data volume, Tbytes	1.42

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human gut metagenome

Gut metagenomes of patients with colorectal cancer

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