Shigella (ID 273284) - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Links from Protein

Accession: PRJNA273284 ID: 273284

Shigella

GenomeTrakr Project: US Food and Drug Administration - CFSAN

Navigate Up

This project is a component of the GenomeTrakr umbrella project for Escherichia coli and Shigella sp.

Navigate Across

52 additional projects are components of the GenomeTrakr umbrella project for Escherichia coli and Shigella sp..

Whole genome sequencing of cultured Shigella as part of FDA/CFSAN's surveillance project for rapid source tracking of foodborne illness outbreaks.

Accession	PRJNA273284
Data Type	Genome sequencing and assembly
Scope	Multispecies
Keyword	GMI
Organism	Shigella[Taxonomy ID: 620] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Publications	Gangiredla J et al., "Draft Genome Sequences of 72 Isolates from All Four Species of Shigella.", Microbiol Resour Announc, 2018 Nov;7(21)
Submission	Registration date: 3-Mar-2018 FDA Center for Food Safety and Applied Nutrition
Related Resources	CFSAN WGS program
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	63994
WGS master	148
Genomic DNA	9
SRA Experiments	133
Protein Sequences	455324
Publications
PubMed	1
PMC	1
Other datasets
BioSample	161
Assembly	149

Assembly details:

Download

Assembly level

Number of Assemblies

1
21
127
149

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_014039075.1	AAVFBJ000000000		SAMN04316448	CFSAN003703	Shigella boydii
GCA_014039295.1	AAVFAP000000000		SAMN04316455	ATCC 8704	Shigella boydii
GCA_014039635.1	AAVFBH000000000		SAMN04316449	CFSAN003845	Shigella boydii
GCA_014039695.1	AAVFBC000000000		SAMN04316453	CFSAN010953	Shigella boydii
GCA_002967135.1	PUGN00000000		SAMN08542241	BS986	Shigella boydii
GCA_002967205.1	PUGO00000000		SAMN08542240	BS984	Shigella boydii
GCA_003572225.1	QWTI00000000		SAMN03291494	DMB SH20140	Shigella boydii
GCA_003572235.1	QWTH00000000		SAMN03291497	DMB SH20139	Shigella boydii
GCA_003572825.1	QWTW00000000		SAMN07974682	DMB SH20247	Shigella boydii
GCA_003572575.1	QWRU00000000		SAMN07974660	DMB SH112	Shigella boydii
GCA_003572565.1	QWRX00000000		SAMN03291506	DMB SH121	Shigella boydii
GCA_003572525.1	QWSJ00000000		SAMN03291466	ATCC 35964	Shigella boydii
GCA_003572535.1	QWSE00000000		SAMN03291467	ATCC 8700	Shigella boydii
GCA_003572485.1	QWSK00000000		SAMN03291468	ATCC 9207	Shigella boydii
GCA_003572455.1	QWSV00000000		SAMN07974670	DMB SH20032	Shigella boydii
GCA_003572405.1	QWSF00000000		SAMN07974663	DMB SH131	Shigella boydii
GCA_003572385.1	QWSD00000000		SAMN07974662	DMB SH129	Shigella boydii
GCA_003572325.1	QXHH00000000		SAMN03291464	ATCC 12030	Shigella boydii
GCA_003572355.1	QWSH00000000		SAMN03291469	ATCC 9905	Shigella boydii
GCA_003572335.1	QWSG00000000		SAMN07974664	DMB SH132	Shigella boydii
GCA_003572305.1	QWSI00000000		SAMN07974665	DMB SH136	Shigella boydii
GCA_003573425.1	QWTG00000000		SAMN03291496	DMB SH20138	Shigella boydii
GCA_003573285.1	QWTX00000000		SAMN07974683	DMB SH20248	Shigella boydii
GCA_014039665.1	AAVFBD000000000		SAMN04323387	CFSAN024429	Shigella dysenteriae
GCA_014039655.1	AAVFBG000000000		SAMN04316452	ATCC 49551	Shigella dysenteriae
GCA_014039555.1	AAVFBB000000000		SAMN04323389	CFSAN024431	Shigella dysenteriae
GCA_014039615.1	AAVFBE000000000		SAMN04316451	CFSAN010951	Shigella dysenteriae
GCA_014039595.1	AAVFBA000000000		SAMN04323388	CFSAN024430	Shigella dysenteriae
GCA_003572835.1	QWTS00000000		SAMN03291465	ATCC 29026	Shigella dysenteriae
GCA_003572415.1	QWSB00000000		SAMN03291511	DMB SH127	Shigella dysenteriae
GCA_003572895.1	QWTO00000000		SAMN03291491	DMB SH20169	Shigella dysenteriae
GCA_003572625.1	QWSC00000000		SAMN07974661	DMB SH128	Shigella dysenteriae
GCA_003572735.1	QWRW00000000		SAMN03291505	DMB SH120	Shigella dysenteriae
GCA_003573065.1	QWTT00000000		SAMN03291476	DMB SH20191	Shigella dysenteriae
GCA_003572995.1	QWSS00000000		SAMN03291462	DMB SH20028	Shigella dysenteriae
GCA_003573295.1	QWTU00000000		SAMN03291477	DMB SH20207	Shigella dysenteriae
GCA_003572115.1	QXID00000000		SAMN07974680	DMB SH20196	Shigella dysenteriae
GCA_003572095.1	QXIF00000000		SAMN03291473	DMB SH20200	Shigella dysenteriae
GCA_003572175.1	QXHX00000000		SAMN03291504	DMB SH116	Shigella dysenteriae
GCA_003572055.1	QXIG00000000		SAMN03291471	DMB SH20201	Shigella dysenteriae
GCA_003572045.1	QXIH00000000		SAMN03291478	DMB SH20208	Shigella dysenteriae
GCA_003572015.1	QXIE00000000		SAMN07974681	DMB SH20198	Shigella dysenteriae
GCA_003572005.1	QXIC00000000		SAMN03291498	DMB SH20168	Shigella dysenteriae
GCA_003571975.1	QXHW00000000		SAMN03291502	DMB SH109	Shigella dysenteriae
GCA_002967245.1	PUGP00000000		SAMN08542239	BS983	Shigella dysenteriae
GCA_002967235.1	PUGT00000000		SAMN08542235	BS979	Shigella dysenteriae
GCA_002967275.1	PUGU00000000		SAMN08542234	BS978	Shigella dysenteriae
GCA_002967595.1	PUGV00000000		SAMN08542232	BS975	Shigella dysenteriae
GCA_002967495.1	PUGM00000000		SAMN08542242	BS987	Shigella dysenteriae
GCA_013968385.1	AAVAAC000000000		SAMN08624451	96G169	Shigella flexneri
GCA_013968365.1	AAUZZZ000000000		SAMN08624453	96G058	Shigella flexneri
GCA_013967745.1	AAUZZS000000000		SAMN08624519	96G082	Shigella flexneri
GCA_013967925.1	AAUZZU000000000		SAMN08624486	G184	Shigella flexneri
GCA_013967995.1	AAUZZW000000000		SAMN08624485	96G084	Shigella flexneri
GCA_013968065.1	AAUZZY000000000		SAMN08624454	96G142	Shigella flexneri
GCA_013968045.1	AAUZZX000000000		SAMN08624458	96G127	Shigella flexneri
GCA_013968025.1	AAUZZV000000000		SAMN08624484	96G083	Shigella flexneri
GCA_013968145.1	AAVAAE000000000		SAMN08624449	G045	Shigella flexneri
GCA_013968125.1	AAVAAB000000000		SAMN08624450	G057	Shigella flexneri
GCA_013968105.1	AAVAAD000000000		SAMN08624448	G106	Shigella flexneri
GCA_013968085.1	AAVAAA000000000		SAMN08624452	96G123	Shigella flexneri
GCA_013968225.1	AAVAAF000000000		SAMN08624101	96G126	Shigella flexneri
GCA_013968165.1	AAVAAG000000000		SAMN08624100	96G132	Shigella flexneri
GCA_002967445.1	PUHH00000000		SAMN08542219	BS938	Shigella flexneri
GCA_002967455.1	PUGJ00000000		SAMN08580446	BS973	Shigella flexneri
GCA_002967435.1	PUHE00000000		SAMN08542222	BS952	Shigella flexneri
GCA_002967405.1	PUHD00000000		SAMN08542223	BS956	Shigella flexneri
GCA_002967395.1	PUHC00000000		SAMN08542224	BS962	Shigella flexneri
GCA_002967375.1	PUHB00000000		SAMN08542225	BS966	Shigella flexneri
GCA_002967355.1	PUHA00000000		SAMN08542226	BS967	Shigella flexneri
GCA_002967545.1	PUGX00000000		SAMN08542229	BS971	Shigella flexneri
GCA_002967575.1	PUHF00000000		SAMN08542221	BS951	Shigella flexneri
GCA_002967535.1	PUGS00000000		SAMN08542236	BS980	Shigella flexneri
GCA_002967625.1	PUHG00000000		SAMN08542220	BS942	Shigella flexneri
GCA_002967615.1	PUHI00000000		SAMN08542218	BS937	Shigella flexneri
GCA_002967655.1	PUHK00000000		SAMN08542215	SH199	Shigella flexneri
GCA_002967635.1	PUHJ00000000		SAMN08542216	SH200	Shigella flexneri
GCA_002967315.1	PUGZ00000000		SAMN08542227	BS968	Shigella flexneri
GCA_002967295.1	PUGY00000000		SAMN08542228	BS970	Shigella flexneri
GCA_002967285.1	PUGW00000000		SAMN08542230	BS972	Shigella flexneri
GCA_002967195.1	PUGR00000000		SAMN08542237	BS981	Shigella flexneri
GCA_002967145.1	PUGL00000000		SAMN08542243	BS988	Shigella flexneri
GCA_002967095.1	PUGK00000000		SAMN08542244	BS989	Shigella flexneri
GCA_002967515.2	PUGQ00000000		SAMN08542238	BS982	Shigella flexneri
GCA_003123665.1	QDEA00000000		SAMN08542231	BS974	Shigella flexneri
GCA_003571965.1	QXIA00000000		SAMN07974677	DMB SH20109	Shigella flexneri
GCA_003572155.1	QXHY00000000		SAMN07974675	DMB SH20107	Shigella flexneri
GCA_003572145.1	QXIB00000000		SAMN03291495	DMB SH20134	Shigella flexneri
GCA_003572085.1	QXHZ00000000		SAMN07974676	DMB SH20108	Shigella flexneri
GCA_003572245.1	QWSQ00000000		SAMN07974668	DMB SH20025	Shigella flexneri
GCA_003572955.1	QWTD00000000		SAMN07974673	DMB SH20101	Shigella flexneri
GCA_003572985.1	QWTB00000000		SAMN03291470	DMB SH20092	Shigella flexneri
GCA_003573035.1	QWSN00000000		SAMN03291482	DMB SH20018	Shigella flexneri
GCA_003572745.1	QWRS00000000		SAMN03291501	DMB SH108	Shigella flexneri
GCA_003572685.1	QWSA00000000		SAMN03291510	DMB SH125	Shigella flexneri
GCA_003572695.1	QWRZ00000000		SAMN03291508	DMB SH123	Shigella flexneri
GCA_003572845.1	QWTR00000000		SAMN07974679	DMB SH20173	Shigella flexneri
GCA_003572645.1	QWRR00000000		SAMN03291500	DMB SH107	Shigella flexneri
GCA_003572495.1	QWSM00000000		SAMN03291484	DMB SH20017	Shigella flexneri
GCA_003572285.1	QWSP00000000		SAMN03291479	DMB SH20024	Shigella flexneri
GCA_003573265.1	QWSR00000000		SAMN03291483	DMB SH20026	Shigella flexneri
GCA_003573225.1	QWST00000000		SAMN03291463	DMB SH20030	Shigella flexneri
GCA_003573235.1	QWSL00000000		SAMN07974666	DMB SH20012	Shigella flexneri
GCA_003573195.1	QWTE00000000		SAMN03291474	DMB SH20102	Shigella flexneri
GCA_003573335.1	QWTC00000000		SAMN03291472	DMB SH20100	Shigella flexneri
GCA_003573315.1	QWTP00000000		SAMN07974678	DMB SH20170	Shigella flexneri
GCA_003573155.1	QWTF00000000		SAMN07974674	DMB SH20103	Shigella flexneri
GCA_013980775.1	AAVAUV000000000		SAMN07571612	PSU_0204	Shigella sonnei
GCA_013980915.1	AAVAVE000000000		SAMN07571651	PSU_0208	Shigella sonnei
GCA_013980975.1	AAVAVG000000000		SAMN07571618	PSU_0205	Shigella sonnei
GCA_013980955.1	AAVAVF000000000		SAMN07571584	PSU_0197	Shigella sonnei
GCA_013980935.1	AAVAVD000000000		SAMN07571616	PSU_0206	Shigella sonnei
GCA_013980895.1	AAVAUX000000000		SAMN07571614	PSU_0203	Shigella sonnei
GCA_013981715.1	AAVAUY000000000		SAMN07571634	PSU_0200	Shigella sonnei
GCA_013981835.1	AAVAUZ000000000		SAMN07571598	PSU_0198	Shigella sonnei
GCA_013981795.1	AAVAVC000000000		SAMN07571648	PSU_0207	Shigella sonnei
GCA_013981775.1	AAVAVA000000000		SAMN07571636	PSU_0201	Shigella sonnei
GCA_013981735.1	AAVAVB000000000		SAMN07571602	PSU_0199	Shigella sonnei
GCA_013988475.1	AAVBID000000000		SAMN07571594	PSU_0216	Shigella sonnei
GCA_013988575.1	AAVBIE000000000		SAMN07571562	PSU_0218	Shigella sonnei
GCA_013988555.1	AAVBIF000000000		SAMN07571563	PSU_0219	Shigella sonnei
GCA_013988535.1	AAVBIG000000000		SAMN07571565	PSU_0217	Shigella sonnei
GCA_013986635.1	AAVBEJ000000000		SAMN07571566	PSU_0212	Shigella sonnei
GCA_013986615.1	AAVBEI000000000		SAMN07571572	PSU_0210	Shigella sonnei
GCA_013985735.1	AAVBEN000000000		SAMN07571653	PSU_0209	Shigella sonnei
GCA_013985745.1	AAVBEL000000000		SAMN07571568	PSU_0214	Shigella sonnei
GCA_013986655.1	AAVBEK000000000		SAMN07571571	PSU_0211	Shigella sonnei
GCA_013985675.1	AAVBEO000000000		SAMN07571573	PSU_0215	Shigella sonnei
GCA_013985655.1	AAVBEM000000000		SAMN07571567	PSU_0213	Shigella sonnei
GCA_013980515.1	AAVAUU000000000		SAMN07571633	PSU_0202	Shigella sonnei
GCA_033940825.1	ABPDJZ000000000		SAMN38372203	ESP23-9201	Shigella sonnei
GCA_003573115.1	QWTN00000000		SAMN03291489	DMB SH20165	Shigella sonnei
GCA_003573105.1	QWTM00000000		SAMN03291488	DMB SH20163	Shigella sonnei
GCA_003573185.1	QWSU00000000		SAMN07974669	DMB SH20031	Shigella sonnei
GCA_003573145.1	QWTJ00000000		SAMN03291493	DMB SH20142	Shigella sonnei
GCA_003573375.1	QWSW00000000		SAMN03291486	DMB SH20033	Shigella sonnei
GCA_003573365.1	QWSZ00000000		SAMN03291512	DMB SH20046	Shigella sonnei
GCA_003573385.1	QWSY00000000		SAMN07974672	DMB SH20036	Shigella sonnei
GCA_003572445.1	QWRT00000000		SAMN07974659	DMB SH111	Shigella sonnei
GCA_003572605.1	QWRV00000000		SAMN03291503	DMB SH114	Shigella sonnei
GCA_003572905.1	QWTL00000000		SAMN03291487	DMB SH20160	Shigella sonnei
GCA_003572885.1	QWTQ00000000		SAMN03291492	DMB SH20171	Shigella sonnei
GCA_003572805.1	QWTV00000000		SAMN03291485	DMB SH20230	Shigella sonnei
GCA_003572725.1	QWRY00000000		SAMN03291507	DMB SH122	Shigella sonnei
GCA_003572635.1	QWTK00000000		SAMN03291490	DMB SH20158	Shigella sonnei
GCA_003573025.1	QWSX00000000		SAMN07974671	DMB SH20034	Shigella sonnei
GCA_003573075.1	QWSO00000000		SAMN07974667	DMB SH20023	Shigella sonnei
GCA_003572945.1	QWTA00000000		SAMN03291481	DMB SH20090	Shigella sonnei
GCA_002442535.1		9	SAMN03612247	CFSAN030807	Shigella sonnei

SRA Data Details

Parameter	Value
Data volume, Gbases	55
Data volume, Mbytes	35057

BioProject

Result Filters

Display Settings:

Send to:

Links from Protein

Shigella

GenomeTrakr Project: US Food and Drug Administration - CFSAN

Supplemental Content

Related information

Related Resources

LinkOut to external resources

Recent activity