Clostridioides difficile (ID 445766) - BioProject

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Accession: PRJNA445766 ID: 445766

Clostridioides difficile

Investigation of large cryptic plasmids in Clostridioides difficile

See Genome Information for Clostridioides difficile

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Investigation of a collection of Clostridioides difficile isolates that each carry a large cryptic plasmid reveals two distinct lineages of plasmid and that are not correlated with the evolution of the bacterial chromosome or associated with particular animal hosts.

Accession	PRJNA445766
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Clostridioides difficile[Taxonomy ID: 1496] Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides; Clostridioides difficile
Publications	Amy J et al., "Identification of large cryptic plasmids in Clostridioides (Clostridium) difficile.", Plasmid, 2018 Mar-May;96-97:25-38
Submission	Registration date: 7-Apr-2019 The University of Melbourne
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	3410
WGS master	20
SRA Experiments	20
Protein Sequences	77082
Publications
PubMed	1
Other datasets
BioSample	20
Assembly	20

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

20
20

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_004684755.1	SRKO00000000	SAMN08798489	CD106	Clostridioides difficile
GCA_004684745.1	SRKP00000000	SAMN08798488	CD12	Clostridioides difficile
GCA_004684695.1	SRKN00000000	SAMN08798490	CD117	Clostridioides difficile
GCA_004684665.1	SRKL00000000	SAMN08798492	CD130	Clostridioides difficile
GCA_004684645.1	SRKK00000000	SAMN08798494	JIR8352	Clostridioides difficile
GCA_004684675.1	SRKM00000000	SAMN08798491	CD119	Clostridioides difficile
GCA_004684655.1	SRKA00000000	SAMN08798493	DLL3026	Clostridioides difficile
GCA_004684595.1	SRKJ00000000	SAMN08798495	JIR8394	Clostridioides difficile
GCA_004684575.1	SRKI00000000	SAMN08798496	JIR8395	Clostridioides difficile
GCA_004684585.1	SRKH00000000	SAMN08798497	JIR8504	Clostridioides difficile
GCA_004684485.1	SRJX00000000	SAMN08798502	MCD22	Clostridioides difficile
GCA_004684495.1	SRJZ00000000	SAMN08798500	MCD10	Clostridioides difficile
GCA_004684515.1	SRKF00000000	SAMN08798499	JIR8560	Clostridioides difficile
GCA_004684565.1	SRKG00000000	SAMN08798498	JIR8556	Clostridioides difficile
GCA_004684475.1	SRJY00000000	SAMN08798501	MCD18	Clostridioides difficile
GCA_004684405.1	SRJT00000000	SAMN08798506	MCD49	Clostridioides difficile
GCA_004684465.1	SRJW00000000	SAMN08798503	MCD38	Clostridioides difficile
GCA_004684415.1	SRJV00000000	SAMN08798504	MCD44	Clostridioides difficile
GCA_004684395.1	SRJU00000000	SAMN08798505	MCD45	Clostridioides difficile
GCA_004684385.1	SRJS00000000	SAMN08798507	MCD71	Clostridioides difficile

SRA Data Details

Parameter	Value
Data volume, Gbases	6
Data volume, Mbytes	3182

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Clostridioides difficile

Investigation of large cryptic plasmids in Clostridioides difficile

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