Klebsiella diversity (ID 384336) - BioProject

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Accession: PRJEB15325 ID: 384336

Klebsiella diversity

Genomes of Klebsiella isolates belonging to different species and isolated in various environments

The study aim to compare genomic content of Klebsiella isolates belonging to different species (Klebsiella pneumoniae, Klebsiella quasipneumoniae and Klebsiella variicola) and isolated from various environments (clinical samples, water, carriage).

Accession	PRJEB15325
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Publications	Rodrigues C et al., "Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.", Res Microbiol, 2019 Apr-May;170(3):165-170 Blin C et al., "Metabolic diversity of the emerging pathogenic lineages of Klebsiella pneumoniae.", Environ Microbiol, 2017 May;19(5):1881-1898
Submission	Registration date: 26-Apr-2017 Genopole Institut Pasteur

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	5845
WGS master	47
SRA Experiments	24
Protein Sequences	199619
Publications
PubMed	2
Other datasets
BioSample	59
Assembly	47

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

23
24
47

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_902158675.1	CABGGZ000000000	SAMEA5753982	-	Klebsiella grimontii
GCA_902158625.1	CABGGQ000000000	SAMEA5610085	-	Klebsiella huaxiensis
GCA_902158615.1	CABGGN000000000	SAMEA5610087	-	Klebsiella huaxiensis
GCA_902158605.1	CABGGW000000000	SAMEA5610086	-	Klebsiella huaxiensis
GCA_901563895.1	CABEJE000000000	SAMEA5610066	-	Klebsiella michiganensis
GCA_901556995.1	CABEJB000000000	SAMEA5610064	-	Klebsiella michiganensis
GCA_901553745.1	CABEJA000000000	SAMEA5610065	-	Klebsiella michiganensis
GCA_900977765.1	CAAHFW000000000	SAMEA5408592	-	Klebsiella oxytoca
GCA_901563825.1	CABEJD000000000	SAMEA5610071	-	Klebsiella pasteurii
GCA_902158725.1	CABGHC000000000	SAMEA5610074	-	Klebsiella pasteurii
GCA_902158705.1	CABGHB000000000	SAMEA5610083	-	Klebsiella pasteurii
GCA_902158695.1	CABGHE000000000	SAMEA5610081	-	Klebsiella pasteurii
GCA_902158715.1	CABGGV000000000	SAMEA5610077	-	Klebsiella pasteurii
GCA_902158585.1	CABGHD000000000	SAMEA5610072	-	Klebsiella pasteurii
GCA_902158575.1	CABGGP000000000	SAMEA5610076	-	Klebsiella pasteurii
GCA_902158545.1	CABGGO000000000	SAMEA5610073	-	Klebsiella pasteurii
GCA_902158655.1	CABGHA000000000	SAMEA5610078	-	Klebsiella pasteurii
GCA_902158665.1	CABGGR000000000	SAMEA5610080	-	Klebsiella pasteurii
GCA_902158645.1	CABGGY000000000	SAMEA5610082	-	Klebsiella pasteurii
GCA_902158685.1	CABGGX000000000	SAMEA5610075	-	Klebsiella pasteurii
GCA_902158635.1	CABGGT000000000	SAMEA5610079	-	Klebsiella pasteurii
GCA_900977905.1	CAAHFZ000000000	SAMEA4425264	04A025	Klebsiella pneumoniae subsp. pneumoniae
GCA_900977655.1	CAAHFT000000000	SAMEA4968478	-	Klebsiella pneumoniae
GCA_900978065.1	CAAHGC000000000	SAMEA4968482	-	Klebsiella pneumoniae
GCA_900978385.1	CAAHGI000000000	SAMEA4968479	-	Klebsiella pneumoniae
GCA_900978345.1	CAAHGH000000000	SAMEA4968481	-	Klebsiella pneumoniae
GCA_900977535.1	CAAHFS000000000	SAMEA4968477	-	Klebsiella pneumoniae
GCA_900576765.1	UTAA00000000	SAMEA4969108	-	Klebsiella quasipneumoniae subsp. similipneumoniae
GCA_900978275.1	CAAHGG000000000	SAMEA4425277	SB610	Klebsiella quasipneumoniae subsp. similipneumoniae
GCA_900978235.1	CAAHGF000000000	SAMEA4968485	-	Klebsiella quasipneumoniae subsp. quasipneumoniae
GCA_900978135.1	CAAHGD000000000	SAMEA4968491	-	Klebsiella quasipneumoniae subsp. similipneumoniae
GCA_900978005.1	CAAHGA000000000	SAMEA4425272	U41	Klebsiella quasipneumoniae subsp. quasipneumoniae
GCA_900977875.1	CAAHFY000000000	SAMEA4425276	12A476	Klebsiella quasipneumoniae subsp. similipneumoniae
GCA_900977715.1	CAAHFV000000000	SAMEA4425275	09A323	Klebsiella quasipneumoniae subsp. similipneumoniae
GCA_900977675.1	CAAHFU000000000	SAMEA4968483	-	Klebsiella quasipneumoniae subsp. quasipneumoniae
GCA_900978495.1	CAAHGK000000000	SAMEA4425273	SB98	Klebsiella quasipneumoniae subsp. quasipneumoniae
GCA_900978035.1	CAAHGB000000000	SAMEA4968493	-	Klebsiella quasivariicola
GCA_902158555.1	CABGGS000000000	SAMEA5610068	-	Klebsiella spallanzanii
GCA_902158595.1	CABGHF000000000	SAMEA5610067	-	Klebsiella spallanzanii
GCA_902158565.1	CABGGU000000000	SAMEA5610069	-	Klebsiella spallanzanii
GCA_901563875.1	CABEJC000000000	SAMEA5610070	-	Klebsiella spallanzanii
GCA_900576775.1	UTAB00000000	SAMEA4969107	-	Klebsiella variicola
GCA_900576745.1	USZZ00000000	SAMEA4969106	-	Klebsiella variicola
GCA_900576735.1	USZY00000000	SAMEA4969105	-	Klebsiella variicola
GCA_900978195.1	CAAHGE000000000	SAMEA4425280	F2R9T	Klebsiella variicola
GCA_900977835.1	CAAHFX000000000	SAMEA4968487	-	Klebsiella variicola
GCA_900978435.1	CAAHGJ000000000	SAMEA4968494	-	Klebsiella variicola subsp. tropica

SRA Data Details

Parameter	Value
Data volume, Gbases	20
Data volume, Mbytes	13859

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Klebsiella diversity

Genomes of Klebsiella isolates belonging to different species and isolated in various environments

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