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Links from Protein

Accession: PRJNA518899 ID: 518899

Clostridioides difficile

Within-host diversity of Clostridioides difficile in children

See Genome Information for Clostridioides difficile
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744 additional projects are related by organism.
Within-host diversity of C. difficile in children
AccessionPRJNA518899
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismClostridioides difficile[Taxonomy ID: 1496]
Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides; Clostridioides difficile
Grants
  • "Optimizing the diagnosis of pediatric Clostridium difficile infection" (Grant ID K23 AI123525, National Institute of Allergy and Infectious Diseases Extramural Activities)
SubmissionRegistration date: 15-Jul-2019
Ann & Robert H. Lurie Children's Hospital of Chicago
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)8693
WGS master77
Protein Sequences290093
Other datasets
BioSample77
Assembly77
Assembly details:
Assembly levelNumber of Assemblies
Contig Contig
Total
77
77
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_007000285.1ContigSERP00000000SAMN10775251
LC5-008-7
Clostridioides difficile
GCA_007000295.1ContigSERQ00000000SAMN10775252
LC5-008-8
Clostridioides difficile
GCA_007002705.1ContigSEOS00000000SAMN10775292
LC3P-047-1
Clostridioides difficile
GCA_007002675.1ContigSEOT00000000SAMN10775293
LC3P-047-2
Clostridioides difficile
GCA_007002685.1ContigSEOU00000000SAMN10775294
LC3P-047-3
Clostridioides difficile
GCA_007002665.1ContigSEOV00000000SAMN10775295
LC3P-047-4
Clostridioides difficile
GCA_007002615.1ContigSEOX00000000SAMN10775297
LC3P-047-6
Clostridioides difficile
GCA_007002635.1ContigSEOW00000000SAMN10775296
LC3P-047-5
Clostridioides difficile
GCA_007002585.1ContigSEOY00000000SAMN10775298
LC3P-047-7
Clostridioides difficile
GCA_007002565.1ContigSEPA00000000SAMN10775300
LC3P-056.5-1
Clostridioides difficile
GCA_007002575.1ContigSEOZ00000000SAMN10775299
LC3P-047-8
Clostridioides difficile
GCA_007002545.1ContigSEPB00000000SAMN10775301
LC3P-056.5-3
Clostridioides difficile
GCA_007002515.1ContigSEPC00000000SAMN10775302
LC3P-056.5-4
Clostridioides difficile
GCA_007002485.1ContigSEPD00000000SAMN10775303
LC3P-056.5-5
Clostridioides difficile
GCA_007002465.1ContigSEPE00000000SAMN10775304
LC3P-056.5-6
Clostridioides difficile
GCA_007002455.1ContigSEPG00000000SAMN10775306
LC3P-056.5-8
Clostridioides difficile
GCA_007002445.1ContigSEPF00000000SAMN10775305
LC3P-056.5-7
Clostridioides difficile
GCA_007002415.1ContigSEPH00000000SAMN10775253
LC3P-119-1
Clostridioides difficile
GCA_007002385.1ContigSEPI00000000SAMN10775254
LC3P-119-2
Clostridioides difficile
GCA_007002365.1ContigSEPJ00000000SAMN10775255
LC3P-119-3
Clostridioides difficile
GCA_007002355.1ContigSEPK00000000SAMN10775256
LC3P-119-4
Clostridioides difficile
GCA_007002345.1ContigSEPL00000000SAMN10775257
LC3P-119-5
Clostridioides difficile
GCA_007002325.1ContigSEPM00000000SAMN10775258
LC3P-119-6
Clostridioides difficile
GCA_007002265.1ContigSEPO00000000SAMN10775260
LC3P-124-1
Clostridioides difficile
GCA_007002285.1ContigSEPN00000000SAMN10775259
LC3P-119-7
Clostridioides difficile
GCA_007002255.1ContigSEPQ00000000SAMN10775262
LC3P-124-3
Clostridioides difficile
GCA_007002235.1ContigSEPP00000000SAMN10775261
LC3P-124-2
Clostridioides difficile
GCA_007002215.1ContigSEPS00000000SAMN10775264
LC3P-124-5
Clostridioides difficile
GCA_007002205.1ContigSEPR00000000SAMN10775263
LC3P-124-4
Clostridioides difficile
GCA_007002155.1ContigSEPT00000000SAMN10775265
LC3P-124-6
Clostridioides difficile
GCA_007002165.1ContigSEPU00000000SAMN10775266
LC3P-124-7
Clostridioides difficile
GCA_007002105.1ContigSEPW00000000SAMN10775268
LC3P-127-1
Clostridioides difficile
GCA_007002145.1ContigSEPV00000000SAMN10775267
LC3P-124-8
Clostridioides difficile
GCA_007002095.1ContigSEPX00000000SAMN10775269
LC3P-127-2
Clostridioides difficile
GCA_007002065.1ContigSEPY00000000SAMN10775270
LC3P-127-3
Clostridioides difficile
GCA_007002055.1ContigSEPZ00000000SAMN10775271
LC3P-127-4
Clostridioides difficile
GCA_007002035.1ContigSEQB00000000SAMN10775273
LC3P-127-6
Clostridioides difficile
GCA_007002025.1ContigSEQA00000000SAMN10775272
LC3P-127-5
Clostridioides difficile
GCA_007001945.1ContigSEQC00000000SAMN10775274
LC3P-127-7
Clostridioides difficile
GCA_007001975.1ContigSEQD00000000SAMN10775275
LC3P-127-8
Clostridioides difficile
GCA_007001985.1ContigSEQE00000000SAMN10775276
LC3P-135-1
Clostridioides difficile
GCA_007001925.1ContigSEQG00000000SAMN10775278
LC3P-135-3
Clostridioides difficile
GCA_007001935.1ContigSEQF00000000SAMN10775277
LC3P-135-2
Clostridioides difficile
GCA_007001905.1ContigSEQH00000000SAMN10775279
LC3P-135-4
Clostridioides difficile
GCA_007001855.1ContigSEQL00000000SAMN10775283
LC3P-135-8
Clostridioides difficile
GCA_007001865.1ContigSEQI00000000SAMN10775280
LC3P-135-5
Clostridioides difficile
GCA_007001845.1ContigSEQJ00000000SAMN10775281
LC3P-135-6
Clostridioides difficile
GCA_007001815.1ContigSEQK00000000SAMN10775282
LC3P-135-7
Clostridioides difficile
GCA_007001795.1ContigSEQM00000000SAMN10775284
LC3P-142-1
Clostridioides difficile
GCA_007001735.1ContigSEQP00000000SAMN10775287
LC3P-142-4
Clostridioides difficile
GCA_007001765.1ContigSEQN00000000SAMN10775285
LC3P-142-2
Clostridioides difficile
GCA_007001725.1ContigSEQO00000000SAMN10775286
LC3P-142-3
Clostridioides difficile
GCA_007001715.1ContigSEQQ00000000SAMN10775288
LC3P-142-5
Clostridioides difficile
GCA_007001705.1ContigSEQR00000000SAMN10775289
LC3P-142-6
Clostridioides difficile
GCA_007001665.1ContigSEQS00000000SAMN10775290
LC3P-142-7
Clostridioides difficile
GCA_007001655.1ContigSEQT00000000SAMN10775291
LC3P-142-8
Clostridioides difficile
GCA_007001645.1ContigSEQU00000000SAMN10775314
LC4-009-0
Clostridioides difficile
GCA_007001605.1ContigSEQV00000000SAMN10775315
LC4-009-1
Clostridioides difficile
GCA_007001585.1ContigSEQX00000000SAMN10775317
LC4-009-3
Clostridioides difficile
GCA_007001595.1ContigSEQW00000000SAMN10775316
LC4-009-2
Clostridioides difficile
GCA_007001555.1ContigSEQY00000000SAMN10775318
LC4-009-5
Clostridioides difficile
GCA_007001545.1ContigSEQZ00000000SAMN10775319
LC4-009-6
Clostridioides difficile
GCA_007001505.1ContigSERA00000000SAMN10775320
LC4-009-7
Clostridioides difficile
GCA_007001495.1ContigSERB00000000SAMN10775321
LC4-009-8
Clostridioides difficile
GCA_007001485.1ContigSERC00000000SAMN10775307
LC4-013-1
Clostridioides difficile
GCA_007000585.1ContigSERD00000000SAMN10775308
LC4-013-2
Clostridioides difficile
GCA_007000575.1ContigSERE00000000SAMN10775309
LC4-013-3
Clostridioides difficile
GCA_007000555.1ContigSERF00000000SAMN10775310
LC4-013-5
Clostridioides difficile
GCA_007000525.1ContigSERG00000000SAMN10775311
LC4-013-6
Clostridioides difficile
GCA_007000505.1ContigSERI00000000SAMN10775313
LC4-013-8
Clostridioides difficile
GCA_007000515.1ContigSERH00000000SAMN10775312
LC4-013-7
Clostridioides difficile
GCA_007000475.1ContigSERJ00000000SAMN10775245
LC5-008-1
Clostridioides difficile
GCA_007000415.1ContigSERK00000000SAMN10775246
LC5-008-2
Clostridioides difficile
GCA_007000435.1ContigSERL00000000SAMN10775247
LC5-008-3
Clostridioides difficile
GCA_007000425.1ContigSERO00000000SAMN10775250
LC5-008-6
Clostridioides difficile
GCA_007000385.1ContigSERN00000000SAMN10775249
LC5-008-5
Clostridioides difficile
GCA_007000395.1ContigSERM00000000SAMN10775248
LC5-008-4
Clostridioides difficile

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