ID 523640 - BioProject

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Accession: PRJNA523640 ID: 523640

blaCTX-M-carrying Escherichia coli from Alberta beef cattle feces and urban wastewater

A previous study has identified the variants blaCTX-M-15 and blaCTX-M-27, which are known to be widespread in bacteria from humans, among Escherichia coli isolates collected from Alberta feedlot cattle. More...

Accession	PRJNA523640
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Cormier AC et al., "Diversity of blaCTX-M-1-carrying plasmids recovered from Escherichia coli isolated from Canadian domestic animals.", PLoS One, 2022;17(3):e0264439
Submission	Registration date: 21-Feb-2019 University of Guelph
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	14541
WGS master	112
Protein Sequences	511828
Publications
PubMed	1
PMC	1
Other datasets
BioSample	112
Assembly	112

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

79
32
111

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_008274115.1	SJFP00000000	SAMN10985292	172	Escherichia coli
GCA_008274065.1	SJFT00000000	SAMN10985296	205	Escherichia coli
GCA_008274035.1	SJFS00000000	SAMN10985295	201	Escherichia coli
GCA_008274045.1	SJFU00000000	SAMN10985297	207	Escherichia coli
GCA_008274025.1	VHKZ00000000	SAMN10985298	216	Escherichia coli
GCA_008274005.1	SJFV00000000	SAMN10985299	227	Escherichia coli
GCA_008273945.1	SJFX00000000	SAMN10985301	287	Escherichia coli
GCA_008273955.1	SJFW00000000	SAMN10985300	230	Escherichia coli
GCA_008273925.1	SJFY00000000	SAMN10985302	332	Escherichia coli
GCA_008273915.1	VHKY00000000	SAMN10985303	347	Escherichia coli
GCA_008273905.1	SJFZ00000000	SAMN10985304	387	Escherichia coli
GCA_008273875.1	SJGA00000000	SAMN10985305	407	Escherichia coli
GCA_008273865.1	SJGB00000000	SAMN10985306	471	Escherichia coli
GCA_008273745.1	SJGF00000000	SAMN10985311	531	Escherichia coli
GCA_008273835.1	SJGC00000000	SAMN10985307	478	Escherichia coli
GCA_008273775.1	SJGG00000000	SAMN10985312	532	Escherichia coli
GCA_008273785.1	VHKX00000000	SAMN10985308	492	Escherichia coli
GCA_008273765.1	SJGD00000000	SAMN10985309	517	Escherichia coli
GCA_008273755.1	SJGE00000000	SAMN10985310	528	Escherichia coli
GCA_008273705.1	SJGH00000000	SAMN10985313	534	Escherichia coli
GCA_008273685.1	SJGI00000000	SAMN10985314	537	Escherichia coli
GCA_008273655.1	VHKW00000000	SAMN10985316	544	Escherichia coli
GCA_008273665.1	SJGJ00000000	SAMN10985315	540	Escherichia coli
GCA_008273645.1	SJGK00000000	SAMN10985317	547	Escherichia coli
GCA_008273595.1	SJGN00000000	SAMN10985320	562	Escherichia coli
GCA_008273615.1	SJGL00000000	SAMN10985318	549	Escherichia coli
GCA_008273545.1	SJGO00000000	SAMN10985321	583	Escherichia coli
GCA_008273535.1	SJGP00000000	SAMN10985322	584	Escherichia coli
GCA_008273525.1	SJGQ00000000	SAMN10985323	601	Escherichia coli
GCA_008273465.1	VHKV00000000	SAMN10985325	627	Escherichia coli
GCA_008273475.1	SJGR00000000	SAMN10985324	617	Escherichia coli
GCA_008273445.1	SJGU00000000	SAMN10985328	649	Escherichia coli
GCA_008273435.1	SJGT00000000	SAMN10985327	648	Escherichia coli
GCA_008273425.1	SJGS00000000	SAMN10985326	640	Escherichia coli
GCA_008273395.1	SJGW00000000	SAMN10985330	657	Escherichia coli
GCA_008273385.1	SJGV00000000	SAMN10985329	653	Escherichia coli
GCA_008273335.1	SJGY00000000	SAMN10985332	667	Escherichia coli
GCA_008273345.1	SJGX00000000	SAMN10985331	661	Escherichia coli
GCA_008273325.1	SJGZ00000000	SAMN10985333	671	Escherichia coli
GCA_008273285.1	SJHB00000000	SAMN10985335	692	Escherichia coli
GCA_008273295.1	SJHA00000000	SAMN10985334	690	Escherichia coli
GCA_008273245.1	SJHD00000000	SAMN10985337	696	Escherichia coli
GCA_008273255.1	SJHC00000000	SAMN10985336	694	Escherichia coli
GCA_008273225.1	SJHE00000000	SAMN10985338	702	Escherichia coli
GCA_008273195.1	SJHH00000000	SAMN10985341	709	Escherichia coli
GCA_008273185.1	SJHF00000000	SAMN10985339	703	Escherichia coli
GCA_008273155.1	SJHG00000000	SAMN10985340	708	Escherichia coli
GCA_008273145.1	SJHI00000000	SAMN10985342	713	Escherichia coli
GCA_008273115.1	SJHK00000000	SAMN10985344	732	Escherichia coli
GCA_008273105.1	SJHJ00000000	SAMN10985343	721	Escherichia coli
GCA_008273065.1	SJHL00000000	SAMN10985345	734	Escherichia coli
GCA_008273045.1	SJHN00000000	SAMN10985347	764	Escherichia coli
GCA_008272995.1	SJHO00000000	SAMN10985348	768	Escherichia coli
GCA_008272985.1	SJHQ00000000	SAMN10985350	775	Escherichia coli
GCA_008272965.1	SJHR00000000	SAMN10985351	802	Escherichia coli
GCA_008272975.1	SJHP00000000	SAMN10985349	774	Escherichia coli
GCA_008272895.1	SJHS00000000	SAMN10985352	809	Escherichia coli
GCA_008272935.1	SJHT00000000	SAMN10985353	815	Escherichia coli
GCA_008272875.1	SJHU00000000	SAMN10985354	829	Escherichia coli
GCA_008272885.1	SJHV00000000	SAMN10985355	848	Escherichia coli
GCA_008272865.1	SJHW00000000	SAMN10985356	853	Escherichia coli
GCA_008272825.1	SJIA00000000	SAMN10985383	117J	Escherichia coli
GCA_008272795.1	SJIB00000000	SAMN10985384	117K	Escherichia coli
GCA_008272785.1	SJHY00000000	SAMN10985358	863	Escherichia coli
GCA_008272765.1	SJHX00000000	SAMN10985357	861	Escherichia coli
GCA_008272775.1	SJHZ00000000	SAMN10985382	117I	Escherichia coli
GCA_008272675.1	SJIF00000000	SAMN10985388	134M	Escherichia coli
GCA_008272715.1	SJIC00000000	SAMN10985385	124L	Escherichia coli
GCA_008272705.1	SJID00000000	SAMN10985387	134K	Escherichia coli
GCA_008272685.1	SJIE00000000	SAMN10985386	134L	Escherichia coli
GCA_008272655.1	SJIG00000000	SAMN10985389	137I	Escherichia coli
GCA_008272645.1	SJIH00000000	SAMN10985390	137L	Escherichia coli
GCA_008272605.1	SJII00000000	SAMN10985391	137M	Escherichia coli
GCA_008272595.1	SJIJ00000000	SAMN10985392	141J	Escherichia coli
GCA_008272575.1	SJIK00000000	SAMN10985393	141M	Escherichia coli
GCA_008272555.1	SJIM00000000	SAMN10985395	143L	Escherichia coli
GCA_008272525.1	SJIL00000000	SAMN10985394	143I	Escherichia coli
GCA_008272515.1	SJIN00000000	SAMN10985396	147I	Escherichia coli
GCA_008272505.1	SJIO00000000	SAMN10985397	147J	Escherichia coli
GCA_008272455.1	SJIP00000000	SAMN10985398	147M	Escherichia coli
GCA_008272445.1	SJIQ00000000	SAMN10985399	149J	Escherichia coli
GCA_008272435.1	SJIR00000000	SAMN10985400	149K	Escherichia coli
GCA_008272425.1	SJIS00000000	SAMN10985401	149M	Escherichia coli
GCA_008272385.1	SJIU00000000	SAMN10985403	152L	Escherichia coli
GCA_008272345.1	SJIV00000000	SAMN10985359	50I	Escherichia coli
GCA_008272355.1	SJIT00000000	SAMN10985402	152J	Escherichia coli
GCA_008272325.1	SJIW00000000	SAMN10985361	53J	Escherichia coli
GCA_008272335.1	VHKU00000000	SAMN10985360	50K	Escherichia coli
GCA_008272285.1	SJIX00000000	SAMN10985362	53k	Escherichia coli
GCA_008272275.1	SJIZ00000000	SAMN10985364	53M	Escherichia coli
GCA_008272245.1	SJIY00000000	SAMN10985363	53L	Escherichia coli
GCA_008272235.1	SJJB00000000	SAMN10985366	60L	Escherichia coli
GCA_008272225.1	SJJA00000000	SAMN10985365	60J	Escherichia coli
GCA_008272185.1	SJJC00000000	SAMN10985367	60M	Escherichia coli
GCA_008272145.1	SJJE00000000	SAMN10985369	62K	Escherichia coli
GCA_008272175.1	SJJD00000000	SAMN10985368	62J	Escherichia coli
GCA_008272125.1	SJJG00000000	SAMN10985371	65K	Escherichia coli
GCA_008272135.1	SJJF00000000	SAMN10985370	62M	Escherichia coli
GCA_008272075.1	SJJI00000000	SAMN10985373	67I	Escherichia coli
GCA_008272085.1	SJJH00000000	SAMN10985372	65L	Escherichia coli
GCA_008272055.1	SJJL00000000	SAMN10985376	81L	Escherichia coli
GCA_008272045.1	SJJJ00000000	SAMN10985374	67M	Escherichia coli
GCA_008272025.1	SJJK00000000	SAMN10985375	81J	Escherichia coli
GCA_008271945.1	SJJP00000000	SAMN10985380	96I	Escherichia coli
GCA_008271955.1	SJJM00000000	SAMN10985377	81M	Escherichia coli
GCA_008271965.1	SJJN00000000	SAMN10985378	89I	Escherichia coli
GCA_008271935.1	SJJQ00000000	SAMN10985381	96J	Escherichia coli
GCA_008271925.1	SJJO00000000	SAMN10985379	89J	Escherichia coli
GCA_008274135.2	SJFQ00000000	SAMN10985293	174	Escherichia coli
GCA_008274105.2	SJFR00000000	SAMN10985294	178	Escherichia coli
GCA_008273565.2	SJGM00000000	SAMN10985319	553	Escherichia coli

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blaCTX-M-carrying Escherichia coli from Alberta beef cattle feces and urban wastewater

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