Enterobacteriaceae (ID 684063) - BioProject

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Accession: PRJDB10450 ID: 684063

Enterobacteriaceae

Genome Sequence of ESBL Producing Zambian Clinical Strains

This project employed two WGS approaches to characterize the location and genetic context of ESBL genes among Enterobacteriaceae from University Teaching Hospital, with the purpose of revealing the underlying mechanisms of acquisition and spread of blaCTX-M gene.

Accession	PRJDB10450
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Organism	Enterobacteriaceae[Taxonomy ID: 543] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae
Grants	"J-GRID" (Grant ID N/A, Japan Agency for Medical Research and Development)
Submission	Registration date: 8-Dec-2020 Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	416
WGS master	46
SRA Experiments	92
Protein Sequences	251826
Other datasets
BioSample	46
Assembly	46

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

46
46

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_016587215.1	BNGK00000000	SAMD00243986	Zam_UTH_44	Enterobacter cloacae
GCA_016587195.1	BNGJ00000000	SAMD00243985	Zam_UTH_43	Escherichia coli
GCA_016587175.1	BNGI00000000	SAMD00243984	Zam_UTH_42	Escherichia coli
GCA_016587155.1	BNGH00000000	SAMD00243983	Zam_UTH_41	Escherichia coli
GCA_016587335.1	BNGQ00000000	SAMD00243992	Zam_UTH_51	Escherichia coli
GCA_016587315.1	BNGP00000000	SAMD00243991	Zam_UTH_50	Escherichia coli
GCA_016587295.1	BNGO00000000	SAMD00243990	Zam_UTH_48	Escherichia coli
GCA_016587275.1	BNGN00000000	SAMD00243989	Zam_UTH_47	Escherichia coli
GCA_016587255.1	BNGM00000000	SAMD00243988	Zam_UTH_46	Escherichia coli
GCA_016587235.1	BNGL00000000	SAMD00243987	Zam_UTH_45	Escherichia coli
GCA_016586535.1	BNFC00000000	SAMD00243952	Zam_UTH_06	Escherichia coli
GCA_016586475.1	BNEZ00000000	SAMD00243949	Zam_UTH_03	Escherichia coli
GCA_016586435.1	BNEX00000000	SAMD00243947	Zam_UTH_01	Escherichia coli
GCA_016586935.1	BNFW00000000	SAMD00243972	Zam_UTH_29	Escherichia coli
GCA_016586915.1	BNFV00000000	SAMD00243971	Zam_UTH_28	Escherichia coli
GCA_016586895.1	BNFU00000000	SAMD00243970	Zam_UTH_27	Escherichia coli
GCA_016586875.1	BNFT00000000	SAMD00243969	Zam_UTH_26	Escherichia coli
GCA_016586855.1	BNFS00000000	SAMD00243968	Zam_UTH_25	Escherichia coli
GCA_016586835.1	BNFR00000000	SAMD00243967	Zam_UTH_24	Escherichia coli
GCA_016586815.1	BNFQ00000000	SAMD00243966	Zam_UTH_23	Escherichia coli
GCA_016586795.1	BNFP00000000	SAMD00243965	Zam_UTH_22	Escherichia coli
GCA_016586775.1	BNFO00000000	SAMD00243964	Zam_UTH_21	Escherichia coli
GCA_016586755.1	BNFN00000000	SAMD00243963	Zam_UTH_20	Escherichia coli
GCA_016586735.1	BNFM00000000	SAMD00243962	Zam_UTH_18	Escherichia coli
GCA_016586715.1	BNFL00000000	SAMD00243961	Zam_UTH_17	Escherichia coli
GCA_016586695.1	BNFK00000000	SAMD00243960	Zam_UTH_15	Escherichia coli
GCA_016586655.1	BNFI00000000	SAMD00243958	Zam_UTH_12	Escherichia coli
GCA_016586675.1	BNFJ00000000	SAMD00243959	Zam_UTH_13	Escherichia coli
GCA_016586635.1	BNFH00000000	SAMD00243957	Zam_UTH_11	Escherichia coli
GCA_016587055.1	BNGC00000000	SAMD00243978	Zam_UTH_36	Escherichia coli
GCA_016587035.1	BNGB00000000	SAMD00243977	Zam_UTH_34	Escherichia coli
GCA_016587015.1	BNGA00000000	SAMD00243976	Zam_UTH_33	Escherichia coli
GCA_016586995.1	BNFZ00000000	SAMD00243975	Zam_UTH_32	Escherichia coli
GCA_016586975.1	BNFY00000000	SAMD00243974	Zam_UTH_31	Escherichia coli
GCA_016587115.1	BNGF00000000	SAMD00243981	Zam_UTH_39	Escherichia coli
GCA_016587095.1	BNGE00000000	SAMD00243980	Zam_UTH_38	Escherichia coli
GCA_016586575.1	BNFE00000000	SAMD00243954	Zam_UTH_08	Escherichia coli
GCA_016587135.1	BNGG00000000	SAMD00243982	Zam_UTH_40	Klebsiella pneumoniae
GCA_016586555.1	BNFD00000000	SAMD00243953	Zam_UTH_07	Klebsiella pneumoniae
GCA_016587075.1	BNGD00000000	SAMD00243979	Zam_UTH_37	Klebsiella pneumoniae
GCA_016586955.1	BNFX00000000	SAMD00243973	Zam_UTH_30	Klebsiella pneumoniae
GCA_016586615.1	BNFG00000000	SAMD00243956	Zam_UTH_10	Klebsiella pneumoniae
GCA_016586595.1	BNFF00000000	SAMD00243955	Zam_UTH_09	Klebsiella pneumoniae
GCA_016586455.1	BNEY00000000	SAMD00243948	Zam_UTH_02	Klebsiella pneumoniae
GCA_016586515.1	BNFB00000000	SAMD00243951	Zam_UTH_05	Klebsiella pneumoniae
GCA_016586495.1	BNFA00000000	SAMD00243950	Zam_UTH_04	Klebsiella pneumoniae

SRA Data Details

Parameter	Value
Data volume, Gbases	34
Data volume, Mbytes	21564

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Enterobacteriaceae

Genome Sequence of ESBL Producing Zambian Clinical Strains

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