GENOMAP (ID 745133) - BioProject

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Accession: PRJEB43898 ID: 745133

GENOMAP

Whole genome sequence of a panel of 142 Mycobacterium avium subsp. paratuberculosis field isolated from french longitudinal study of infected dairy cattle.

Mycobacterium avium subspecies paratuberculosis (Map) is the etiological agent of Johne’s disease in ruminants. More...

Accession	PRJEB43898
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Publications	Conde C et al., "Draft Genome Sequences of 142 Mycobacterium avium subsp. paratuberculosis Strains Isolated from Naturally Infected Dairy Cattle.", Microbiol Resour Announc, 2021 Sep 23;10(38):e0069721
Submission	Registration date: 9-Jul-2021 inrae tours

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	24754
WGS master	138
Genomic DNA	4
SRA Experiments	192
Protein Sequences	640322
Publications
PubMed	1
PMC	1
Other datasets
BioSample	188
Assembly	142

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

4
138
142

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_910593945.1	CAJVAU000000000		SAMEA8407275	PICSAR216	Mycobacterium avium subsp. paratuberculosis
GCA_910593905.1	CAJVAV000000000		SAMEA8407276	PICSAR218	Mycobacterium avium subsp. paratuberculosis
GCA_910593775.1	CAJVAR000000000		SAMEA8407224	PICSAR136	Mycobacterium avium subsp. paratuberculosis
GCA_910593605.1	CAJVAT000000000		SAMEA8407274	PICSAR215	Mycobacterium avium subsp. paratuberculosis
GCA_910593585.1	CAJVAW000000000		SAMEA8407263	PICSAR201	Mycobacterium avium subsp. paratuberculosis
GCA_909129975.1	CAJSRS000000000		SAMEA8692683	PICSAR236	Mycobacterium avium subsp. paratuberculosis
GCA_909129965.1	CAJSRX000000000		SAMEA8692681	PICSAR171	Mycobacterium avium subsp. paratuberculosis
GCA_909130005.1	CAJSRT000000000		SAMEA8692685	PICSAR190	Mycobacterium avium subsp. paratuberculosis
GCA_909129955.1	CAJSRV000000000		SAMEA8692684	PICSAR35	Mycobacterium avium subsp. paratuberculosis
GCA_909129935.1	CAJSRU000000000		SAMEA8407231	PICSAR144	Mycobacterium avium subsp. paratuberculosis
GCA_909129925.1	CAJSRW000000000		SAMEA8692682	PICSAR200	Mycobacterium avium subsp. paratuberculosis
GCA_909129915.1	CAJSRR000000000		SAMEA8692679	PICSAR213	Mycobacterium avium subsp. paratuberculosis
GCA_909129905.1	CAJSRQ000000000		SAMEA8692680	PICSAR87	Mycobacterium avium subsp. paratuberculosis
GCA_909129895.1	CAJSRP000000000		SAMEA8692678	PICSAR97	Mycobacterium avium subsp. paratuberculosis
GCA_909129885.1	CAJSRO000000000		SAMEA8692677	PICSAR138	Mycobacterium avium subsp. paratuberculosis
GCA_909129875.1	CAJSRN000000000		SAMEA8692676	PICSAR39	Mycobacterium avium subsp. paratuberculosis
GCA_909129865.1	CAJSRM000000000		SAMEA8692675	PICSAR42	Mycobacterium avium subsp. paratuberculosis
GCA_909129845.1	CAJSRL000000000		SAMEA8407344	PICSAR98	Mycobacterium avium subsp. paratuberculosis
GCA_909129855.1	CAJSRK000000000		SAMEA8407343	PICSAR94	Mycobacterium avium subsp. paratuberculosis
GCA_909129835.1	CAJSRJ000000000		SAMEA8692674	PICSAR85	Mycobacterium avium subsp. paratuberculosis
GCA_909129825.1	CAJSRI000000000		SAMEA8407342	PICSAR9	Mycobacterium avium subsp. paratuberculosis
GCA_909129815.1	CAJSRG000000000		SAMEA8407339	PICSAR78	Mycobacterium avium subsp. paratuberculosis
GCA_909129785.1	CAJSRH000000000		SAMEA8407341	PICSAR81	Mycobacterium avium subsp. paratuberculosis
GCA_909129795.1	CAJSRE000000000		SAMEA8407340	PICSAR8	Mycobacterium avium subsp. paratuberculosis
GCA_909129765.1	CAJSRD000000000		SAMEA8407336	PICSAR75	Mycobacterium avium subsp. paratuberculosis
GCA_909129745.1	CAJSRA000000000		SAMEA8407331	PICSAR70	Mycobacterium avium subsp. paratuberculosis
GCA_909129775.1	CAJSQY000000000		SAMEA8407334	PICSAR73	Mycobacterium avium subsp. paratuberculosis
GCA_909129755.1	CAJSRB000000000		SAMEA8407335	PICSAR74	Mycobacterium avium subsp. paratuberculosis
GCA_909129725.1	CAJSQW000000000		SAMEA8407337	PICSAR76	Mycobacterium avium subsp. paratuberculosis
GCA_909129695.1	CAJSQV000000000		SAMEA8407330	PICSAR7	Mycobacterium avium subsp. paratuberculosis
GCA_909129735.1	CAJSQX000000000		SAMEA8407332	PICSAR71	Mycobacterium avium subsp. paratuberculosis
GCA_909129715.1	CAJSRC000000000		SAMEA8407333	PICSAR72	Mycobacterium avium subsp. paratuberculosis
GCA_909129685.1	CAJSQU000000000		SAMEA8407327	PICSAR65	Mycobacterium avium subsp. paratuberculosis
GCA_909129675.1	CAJSQT000000000		SAMEA8407326	PICSAR64	Mycobacterium avium subsp. paratuberculosis
GCA_909129665.1	CAJSQS000000000		SAMEA8407325	PICSAR63	Mycobacterium avium subsp. paratuberculosis
GCA_909129655.1	CAJSQQ000000000		SAMEA8407322	PICSAR6	Mycobacterium avium subsp. paratuberculosis
GCA_909129645.1	CAJSQR000000000		SAMEA8407324	PICSAR61	Mycobacterium avium subsp. paratuberculosis
GCA_909129635.1	CAJSQP000000000		SAMEA8407319	PICSAR56	Mycobacterium avium subsp. paratuberculosis
GCA_909129625.1	CAJSQO000000000		SAMEA8407320	PICSAR58	Mycobacterium avium subsp. paratuberculosis
GCA_909129605.1	CAJSQM000000000		SAMEA8407316	PICSAR52	Mycobacterium avium subsp. paratuberculosis
GCA_909129585.1	CAJSQK000000000		SAMEA8407318	PICSAR55	Mycobacterium avium subsp. paratuberculosis
GCA_909129615.1	CAJSQN000000000		SAMEA8407317	PICSAR53	Mycobacterium avium subsp. paratuberculosis
GCA_909129575.1	CAJSQJ000000000		SAMEA8407314	PICSAR5	Mycobacterium avium subsp. paratuberculosis
GCA_909129525.1	CAJSQE000000000		SAMEA8407308	PICSAR4	Mycobacterium avium subsp. paratuberculosis
GCA_909129555.1	CAJSQD000000000		SAMEA8407311	PICSAR47	Mycobacterium avium subsp. paratuberculosis
GCA_909129535.1	CAJSQI000000000		SAMEA8407310	PICSAR46	Mycobacterium avium subsp. paratuberculosis
GCA_909129515.1	CAJSQH000000000		SAMEA8407306	PICSAR36	Mycobacterium avium subsp. paratuberculosis
GCA_909129545.1	CAJSQB000000000		SAMEA8407307	PICSAR38	Mycobacterium avium subsp. paratuberculosis
GCA_909129565.1	CAJSQC000000000		SAMEA8407309	PICSAR43	Mycobacterium avium subsp. paratuberculosis
GCA_909129505.1	CAJSQF000000000		SAMEA8407313	PICSAR49	Mycobacterium avium subsp. paratuberculosis
GCA_909129495.1	CAJSQG000000000		SAMEA8407312	PICSAR48	Mycobacterium avium subsp. paratuberculosis
GCA_909129475.1	CAJSQA000000000		SAMEA8407305	PICSAR30	Mycobacterium avium subsp. paratuberculosis
GCA_909129485.1	CAJSPZ000000000		SAMEA8407304	PICSAR3	Mycobacterium avium subsp. paratuberculosis
GCA_909129465.1	CAJSPY000000000		SAMEA8407300	PICSAR26	Mycobacterium avium subsp. paratuberculosis
GCA_909129455.1	CAJSPX000000000		SAMEA8407302	PICSAR28	Mycobacterium avium subsp. paratuberculosis
GCA_909129445.1	CAJSPW000000000		SAMEA8407297	PICSAR255	Mycobacterium avium subsp. paratuberculosis
GCA_909129435.1	CAJSPU000000000		SAMEA8407303	PICSAR29	Mycobacterium avium subsp. paratuberculosis
GCA_909129425.1	CAJSPV000000000		SAMEA8407296	PICSAR254	Mycobacterium avium subsp. paratuberculosis
GCA_909129415.1	CAJSPT000000000		SAMEA8692673	PICSAR253	Mycobacterium avium subsp. paratuberculosis
GCA_909129405.1	CAJSPS000000000		SAMEA8407295	PICSAR252	Mycobacterium avium subsp. paratuberculosis
GCA_909129395.1	CAJSPM000000000		SAMEA8692672	PICSAR25	Mycobacterium avium subsp. paratuberculosis
GCA_909129385.1	CAJSPP000000000		SAMEA8407285	PICSAR238	Mycobacterium avium subsp. paratuberculosis
GCA_909129375.1	CAJSPL000000000		SAMEA8407292	PICSAR249	Mycobacterium avium subsp. paratuberculosis
GCA_909129365.1	CAJSPO000000000		SAMEA8407283	PICSAR232	Mycobacterium avium subsp. paratuberculosis
GCA_909129335.1	CAJSPH000000000		SAMEA8407282	PICSAR23	Mycobacterium avium subsp. paratuberculosis
GCA_909129325.1	CAJSPR000000000		SAMEA8407289	PICSAR246	Mycobacterium avium subsp. paratuberculosis
GCA_909129355.1	CAJSPN000000000		SAMEA8407287	PICSAR240	Mycobacterium avium subsp. paratuberculosis
GCA_909129345.1	CAJSPJ000000000		SAMEA8407291	PICSAR248	Mycobacterium avium subsp. paratuberculosis
GCA_909129305.1	CAJSPQ000000000		SAMEA8407284	PICSAR235	Mycobacterium avium subsp. paratuberculosis
GCA_909129295.1	CAJSPK000000000		SAMEA8407286	PICSAR24	Mycobacterium avium subsp. paratuberculosis
GCA_909129315.1	CAJSPI000000000		SAMEA8407293	PICSAR250	Mycobacterium avium subsp. paratuberculosis
GCA_909129275.1	CAJSPD000000000		SAMEA8407268	PICSAR208	Mycobacterium avium subsp. paratuberculosis
GCA_909129225.1	CAJSPG000000000		SAMEA8407269	PICSAR209	Mycobacterium avium subsp. paratuberculosis
GCA_909129255.1	CAJSPB000000000		SAMEA8407271	PICSAR211	Mycobacterium avium subsp. paratuberculosis
GCA_909129215.1	CAJSPA000000000		SAMEA8692671	PICSAR21	Mycobacterium avium subsp. paratuberculosis
GCA_909129245.1	CAJSPE000000000		SAMEA8407280	PICSAR222	Mycobacterium avium subsp. paratuberculosis
GCA_909129265.1	CAJSPC000000000		SAMEA8407273	PICSAR214	Mycobacterium avium subsp. paratuberculosis
GCA_909129235.1	CAJSPF000000000		SAMEA8407279	PICSAR22	Mycobacterium avium subsp. paratuberculosis
GCA_909129195.1	CAJSOQ000000000		SAMEA8407255	PICSAR19	Mycobacterium avium subsp. paratuberculosis
GCA_909129185.1	CAJSOW000000000		SAMEA8407261	PICSAR2	Mycobacterium avium subsp. paratuberculosis
GCA_909129175.1	CAJSOU000000000		SAMEA8407257	PICSAR192	Mycobacterium avium subsp. paratuberculosis
GCA_909129135.1	CAJSOP000000000		SAMEA8692670	PICSAR205	Mycobacterium avium subsp. paratuberculosis
GCA_909129165.1	CAJSON000000000		SAMEA8407260	PICSAR198	Mycobacterium avium subsp. paratuberculosis
GCA_909129145.1	CAJSOT000000000		SAMEA8407267	PICSAR206	Mycobacterium avium subsp. paratuberculosis
GCA_909129155.1	CAJSOX000000000		SAMEA8407264	PICSAR202	Mycobacterium avium subsp. paratuberculosis
GCA_909129125.1	CAJSOO000000000		SAMEA8407259	PICSAR197	Mycobacterium avium subsp. paratuberculosis
GCA_909129095.1	CAJSOS000000000		SAMEA8407258	PICSAR196	Mycobacterium avium subsp. paratuberculosis
GCA_909129105.1	CAJSOV000000000		SAMEA8407266	PICSAR204	Mycobacterium avium subsp. paratuberculosis
GCA_909129115.1	CAJSOR000000000		SAMEA8407256	PICSAR191	Mycobacterium avium subsp. paratuberculosis
GCA_909129065.1	CAJSOH000000000		SAMEA8407247	PICSAR178	Mycobacterium avium subsp. paratuberculosis
GCA_909129045.1	CAJSOG000000000		SAMEA8407250	PICSAR180	Mycobacterium avium subsp. paratuberculosis
GCA_909129085.1	CAJSOK000000000		SAMEA8407248	PICSAR179	Mycobacterium avium subsp. paratuberculosis
GCA_909129035.1	CAJSOJ000000000		SAMEA8407253	PICSAR184	Mycobacterium avium subsp. paratuberculosis
GCA_909129075.1	CAJSOE000000000		SAMEA8407246	PICSAR172	Mycobacterium avium subsp. paratuberculosis
GCA_909129055.1	CAJSOM000000000		SAMEA8407249	PICSAR18	Mycobacterium avium subsp. paratuberculosis
GCA_909129015.1	CAJSOF000000000		SAMEA8407252	PICSAR182	Mycobacterium avium subsp. paratuberculosis
GCA_909129005.1	CAJSOL000000000		SAMEA8407254	PICSAR189	Mycobacterium avium subsp. paratuberculosis
GCA_909129025.1	CAJSOI000000000		SAMEA8407251	PICSAR181	Mycobacterium avium subsp. paratuberculosis
GCA_909128975.1	CAJSOC000000000		SAMEA8407243	PICSAR164	Mycobacterium avium subsp. paratuberculosis
GCA_909128995.1	CAJSOB000000000		SAMEA8692669	PICSAR168B	Mycobacterium avium subsp. paratuberculosis
GCA_909128965.1	CAJSOD000000000		SAMEA8407242	PICSAR160	Mycobacterium avium subsp. paratuberculosis
GCA_909128985.1	CAJSNZ000000000		SAMEA8407244	PICSAR168	Mycobacterium avium subsp. paratuberculosis
GCA_909128955.1	CAJSOA000000000		SAMEA8692668	PICSAR162	Mycobacterium avium subsp. paratuberculosis
GCA_909128925.1	CAJSNY000000000		SAMEA8407237	PICSAR15	Mycobacterium avium subsp. paratuberculosis
GCA_909128935.1	CAJSNX000000000		SAMEA8407228	PICSAR141	Mycobacterium avium subsp. paratuberculosis
GCA_909128945.1	CAJSNW000000000		SAMEA8407227	PICSAR140	Mycobacterium avium subsp. paratuberculosis
GCA_909128885.1	CAJSNN000000000		SAMEA8407240	PICSAR157	Mycobacterium avium subsp. paratuberculosis
GCA_909128895.1	CAJSNK000000000		SAMEA8407241	PICSAR16	Mycobacterium avium subsp. paratuberculosis
GCA_909128905.1	CAJSNO000000000		SAMEA8407234	PICSAR147	Mycobacterium avium subsp. paratuberculosis
GCA_909128875.1	CAJSNR000000000		SAMEA8407223	PICSAR135	Mycobacterium avium subsp. paratuberculosis
GCA_909128915.1	CAJSNV000000000		SAMEA8407232	PICSAR145	Mycobacterium avium subsp. paratuberculosis
GCA_909128805.1	CAJSNM000000000		SAMEA8407235	PICSAR148	Mycobacterium avium subsp. paratuberculosis
GCA_909128865.1	CAJSNL000000000		SAMEA8407239	PICSAR154	Mycobacterium avium subsp. paratuberculosis
GCA_909128835.1	CAJSNU000000000		SAMEA8692667	PICSAR131	Mycobacterium avium subsp. paratuberculosis
GCA_909128845.1	CAJSNP000000000		SAMEA8407226	PICSAR14	Mycobacterium avium subsp. paratuberculosis
GCA_909128815.1	CAJSNQ000000000		SAMEA8407222	PICSAR132	Mycobacterium avium subsp. paratuberculosis
GCA_909128825.1	CAJSNT000000000		SAMEA8407230	PICSAR143	Mycobacterium avium subsp. paratuberculosis
GCA_909128795.1	CAJSNJ000000000		SAMEA8407220	PICSAR13	Mycobacterium avium subsp. paratuberculosis
GCA_909128785.1	CAJSNI000000000		SAMEA8407215	PICSAR124	Mycobacterium avium subsp. paratuberculosis
GCA_909128775.1	CAJSNH000000000		SAMEA8407217	PICSAR126	Mycobacterium avium subsp. paratuberculosis
GCA_909128765.1	CAJSMY000000000		SAMEA8407205	PICSAR11	Mycobacterium avium subsp. paratuberculosis
GCA_909128675.1	CAJSND000000000		SAMEA8407202	PICSAR104	Mycobacterium avium subsp. paratuberculosis
GCA_909128745.1	CAJSMZ000000000		SAMEA8692664	PICSAR100	Mycobacterium avium subsp. paratuberculosis
GCA_909128735.1	CAJSMU000000000		SAMEA8407201	PICSAR103	Mycobacterium avium subsp. paratuberculosis
GCA_909128695.1	CAJSMV000000000		SAMEA8407204	PICSAR107	Mycobacterium avium subsp. paratuberculosis
GCA_909128665.1	CAJSNE000000000		SAMEA8407207	PICSAR111	Mycobacterium avium subsp. paratuberculosis
GCA_909128715.1	CAJSMX000000000		SAMEA8692665	PICSAR120	Mycobacterium avium subsp. paratuberculosis
GCA_909128725.1	CAJSNA000000000		SAMEA8692666	PICSAR124B	Mycobacterium avium subsp. paratuberculosis
GCA_909128755.1	CAJSNF000000000		SAMEA8407198	PICSAR1	Mycobacterium avium subsp. paratuberculosis
GCA_909128645.1	CAJSNC000000000		SAMEA8407203	PICSAR106	Mycobacterium avium subsp. paratuberculosis
GCA_909128705.1	CAJSMR000000000		SAMEA8407199	PICSAR10	Mycobacterium avium subsp. paratuberculosis
GCA_909128685.1	CAJSMS000000000		SAMEA8407206	PICSAR110	Mycobacterium avium subsp. paratuberculosis
GCA_909128655.1	CAJSMW000000000		SAMEA8407213	PICSAR119	Mycobacterium avium subsp. paratuberculosis
GCA_909128635.1	CAJSNG000000000		SAMEA8407209	PICSAR113	Mycobacterium avium subsp. paratuberculosis
GCA_909128625.1	CAJSMT000000000		SAMEA8407211	PICSAR117	Mycobacterium avium subsp. paratuberculosis
GCA_909128615.1	CAJSNB000000000		SAMEA8407212	PICSAR118	Mycobacterium avium subsp. paratuberculosis
GCA_911528495.1	CAJVRD000000000		SAMEA8407270	PICSAR210	Mycobacterium avium subsp. paratuberculosis
GCA_909129705.2		1	SAMEA8407329	PICSAR68	Mycobacterium avium subsp. paratuberculosis
GCA_909129595.2		1	SAMEA8407315	PICSAR51	Mycobacterium avium subsp. paratuberculosis
GCA_909128855.2		1	SAMEA8407229	PICSAR142	Mycobacterium avium subsp. paratuberculosis
GCA_909129805.2		1	SAMEA8407338	PICSAR77	Mycobacterium avium subsp. paratuberculosis
GCA_905398855.1	CAJPZJ000000000		SAMEA8407200	PICSAR102	Mycobacterium avium subsp. paratuberculosis

SRA Data Details

Parameter	Value
Data volume, Gbases	72
Data volume, Mbytes	35055

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GENOMAP

Whole genome sequence of a panel of 142 Mycobacterium avium subsp. paratuberculosis field isolated from french longitudinal study of infected dairy cattle.

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