Complete genome sequencing and de novo assembly (using a combination of PacBio long reads and Illumina MiSeq data) as basis for further functional genomics studies including TnSeq to identify essential or fitness-relevant genes.
| Accession | PRJNA524303 |
| Data Type | Genome sequencing and assembly |
| Scope | Multispecies |
| Publications (total 7) Less... | - Belda E et al., "The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis.", Environ Microbiol, 2016 Oct;18(10):3403-3424
More...- Belda E et al., "The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis.", Environ Microbiol, 2016 Oct;18(10):3403-3424
- Mercy C et al., "Functional Characterization of Pseudomonas Contact Dependent Growth Inhibition (CDI) Systems.", PLoS One, 2016;11(1):e0147435
- Sana TG et al., "Internalization of Pseudomonas aeruginosa Strain PAO1 into Epithelial Cells Is Promoted by Interaction of a T6SS Effector with the Microtubule Network.", mBio, 2015 Jun 2;6(3):e00712
- Baltrus DA et al., "Draft Genome Sequences of a Phylogenetically Diverse Suite of Pseudomonas syringae Strains from Multiple Source Populations.", Genome Announc, 2014 Jan 23;2(1)
- Berge O et al., "A user's guide to a data base of the diversity of Pseudomonas syringae and its application to classifying strains in this phylogenetic complex.", PLoS One, 2014;9(9):e105547
- Demba Diallo M et al., "Pseudomonas syringae naturally lacking the canonical type III secretion system are ubiquitous in nonagricultural habitats, are phylogenetically diverse and can be pathogenic.", ISME J, 2012 Jul;6(7):1325-35
- Nelson KE et al., "Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.", Environ Microbiol, 2002 Dec;4(12):799-808
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| Grants | - "Development of a novel, integrative proteogenomics approach to discover the entire protein-coding potential of prokaryotic genomes" (Grant ID 31003A-156320, Swiss National Fund)
- "AAP research grant" (Grant ID -, FR Bioenvis and BQR UCBL)
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| Submission | Registration date: 26-Feb-2019
Universite Claude Bernard Lyon 1 |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (Genomic DNA) | 4 |
| SRA Experiments | 12 |
| Protein Sequences | 21680 |
| Publications |
| PubMed | 7 |
| PMC | 5 |
| Other datasets |
| BioSample | 16 |
| Assembly | 4 |