Oryzias latipes strain:Hd-rR (ID 183868) - BioProject

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Accession: PRJNA183868 ID: 183868

Oryzias latipes strain:Hd-rR (Japanese medaka)

Oryzias latipes (medaka) strain Hd-rR reference genome (RefSeq) sequence

See Genome Information for Oryzias latipes

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167 additional projects are related by organism.

The reference sequence (RefSeq) genome assembly of strain Hd-rR is provided by NCBI using assembly instructions provided by the Medaka Genome Sequence Project.

Accession	PRJNA183868
Data Type	RefSeq Genome
Scope	Monoisolate
Organism	Oryzias latipes[Taxonomy ID: 8090] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias; Oryzias latipes
Publications (total 4) Less...	Ichikawa K et al., "Centromere evolution and CpG methylation during vertebrate speciation.", Nat Commun, 2017 Nov 28;8(1):1833 More... Ichikawa K et al., "Centromere evolution and CpG methylation during vertebrate speciation.", Nat Commun, 2017 Nov 28;8(1):1833 Pasquier J et al., "Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.", BMC Genomics, 2016 May 18;17:368 Kasahara M et al., "The medaka draft genome and insights into vertebrate genome evolution.", Nature, 2007 Jun 7;447(7145):714-9 Miya M et al., "Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences.", Mol Phylogenet Evol, 2003 Jan;26(1):121-38 Less...
Submission	Registration date: 27-Jul-2017 Medaka genome sequencing project - University of Tokyo, Chiba , Japan
Related Resources	GOLD

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	49745
Genomic DNA	48
Transcript	49697
Protein Sequences	44753
Publications
PubMed	4
PMC	2
Other datasets
BioSample	1
Assembly	1

Assembly details:

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Assembly	Level	Chrs	BioSample	Taxonomy
GCF_002234675.1	Chromosome	25	SAMN06689957	Oryzias latipes

Related GenBank Project

PRJNA16702 : Draft genome sequence of Oryzias latipes (medaka) strain Hd-rR

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Oryzias latipes strain:Hd-rR (Japanese medaka)

Oryzias latipes (medaka) strain Hd-rR reference genome (RefSeq) sequence

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