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Links from Protein

Accession: PRJNA283228 ID: 283228

microbial mat metagenome

Hot Lake Unicyanobacterial Consortia

Microbial autotroph-heterotroph interactions influence biogeochemical cycles on a global scale, but the diversity and complexity of natural systems and their intractability to in situ manipulation make it challenging to elucidate the principles governing these interactions. More...
AccessionPRJNA283228
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismmicrobial mat metagenome[Taxonomy ID: 527640]
unclassified sequences; metagenomes; ecological metagenomes; microbial mat metagenome
Publications
  • Nelson WC et al., "Identification and Resolution of Microdiversity through Metagenomic Sequencing of Parallel Consortia.", Appl Environ Microbiol, 2016 Jan 1;82(1):255-67
  • Cole JK et al., "Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions.", Front Microbiol, 2014;5:109
SubmissionRegistration date: 14-Oct-2015
Pacific Northwest National Laboratroy
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)2064
WGS master20
Genomic DNA3
SRA Experiments331
Protein Sequences63471
Publications
PubMed2
PMC2
Other datasets
BioSample26
Assembly21
Assembly details:
Assembly levelNumber of Assemblies
1
17
3
21
AssemblyLevelWGSChrsBioSampleIsolateTaxonomy
GCA_001314815.1ScaffoldLJXT00000000
SAMN03785510
HL-49
GCA_001314545.1ContigLIHN00000000
SAMN03785493
HLUCCA01
GCA_002813895.1Complete genomeSAMN05326725
HL-69
GCA_001314765.1ScaffoldLJSW00000000
SAMN03785506
HL-111
GCA_001314875.1ScaffoldLJZS00000000
SAMN03785500
HL-48
GCA_001314745.1ScaffoldLJST00000000
SAMN03785504
HL-93
GCA_001314555.1ContigLIHO00000000
SAMN03785502
HL-53
GCA_001314845.1ScaffoldLJZQ00000000
SAMN03785511
HL-55
GCA_001314605.1ScaffoldLIHP00000000
SAMN03785503
HL-58
GCA_001314625.1ScaffoldLJSH00000000
SAMN03785494
HLUCCA04
GCA_001314865.1ScaffoldLJZR00000000
SAMN03785498
Ana
GCA_001314905.1ScaffoldLJZT00000000
SAMN03785507
OSCR
GCA_001314525.1ScaffoldLLEX00000000
SAMN03785512
HL-46
GCA_001314655.1ScaffoldLJSF00000000
SAMN03785496
HLUCCA08
GCA_001314685.1ScaffoldLJNT00000000
SAMN03785497
HLUCCA09
GCA_001314715.1ScaffoldLJSV00000000
SAMN03785499
HLUCCA12
GCA_001314535.1ScaffoldLKOZ00000000
SAMN03785501
HLUCCA24
GCA_001314705.1ScaffoldLJSU00000000
SAMN03785505
HLUCCO07
GCA_001314805.1ScaffoldLJSY00000000
SAMN03785509
HLUCCO18
GCA_001314645.1ScaffoldLJSG00000000
SAMN03785495
HL-91
GCA_001314785.1ContigLJSX00000000
SAMN03785508
HL-109
SRA Data Details
ParameterValue
Data volume, Gbases58
Data volume, Mbytes43467

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