marine sediment metagenome (ID 293354) - BioProject

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Accession: PRJNA293354 ID: 293354

Methanogenic consortium capable of long-chain

paraffin degradation (SDB culture) enriched

from contaminated sediments of San Diego Bay,

California; Degrades n-alkanes C25-C50

Accession	PRJNA293354
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	marine sediment metagenome[Taxonomy ID: 412755] unclassified sequences; metagenomes; ecological metagenomes; marine sediment metagenome
Publications	Published online: "Diversity of benzyl- and alkylsuccinate synthase genes in hydrocarbon-impacted environments and enrichment cultures.", Environmental science & technology, 2010;44(19):7287-7294
Grants	"Biochemistry and Genetics of Anaerobic Alkane Metabolism: Interrogation of Sulfate-Reducing Isolates and Enrichments Using Genome-Enabled and Proteomic Approaches" (Grant ID MCB-0921265, National Science Foundation) "Elucidation of Alkene Metabolism in Two Sulfate-Reducing Isolates Via Metabolite Profiling and Transcriptomics" (Grant ID MCB-1329890, National Science Foundation)
Submission	Registration date: 26-Oct-2015 University of Oklahoma
Relevance	Industrial

Project Data:

Assembly level

Number of Assemblies

6
6

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_001412425.1	LKUH00000000	SAMN04125647	SDB	Candidatus Cloacimonas sp. SDB
GCA_001412365.1	LKUE00000000	SAMN04125646	SDB	Desulfuromonas sp. SDB
GCA_001412355.1	LKUD00000000	SAMN04125645	SDB	Methanoculleus sp. SDB
GCA_001412335.1	LKUF00000000	SAMN04125648	SDB	Methanolinea sp. SDB
GCA_001412415.1	LKUG00000000	SAMN04125649	SDB	Methanosaeta sp. SDB
GCA_001412345.1	LKUC00000000	SAMN04125644	SDB	Smithella sp. SDB

Parameter	Value
Data volume, Gbases	6
Data volume, Mbytes	3237