ID 509690 - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Links from SRA

Accession: PRJNA509690 ID: 509690

Genomic analysis of porcine faecal commensal E. coli from sows and their offspring

Navigate Up

This project is a component of the Genome submissions of the Ausgem initiative

Navigate Across

15 additional projects are components of the Genome submissions of the Ausgem initiative.

This genomic epidemiological study aims to characterise commensal E. coli sourced from faeces of healthy post-weaned piglets and their mothers as a potential reservoir of antimicrobial resistance and virulence plasmids, and assess their potential as humans pathogens

Accession	PRJNA509690
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 12-Dec-2018 The ithree institute
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	29085
WGS master	117
SRA Experiments	117
Other datasets
BioSample	117
Assembly	117

Assembly details:

Download

Assembly level

Number of Assemblies

Scaffold

Contig

Total

18
99
117

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_004171215.1	SAFP00000000	SAMN10587048	TZ33_1P	Escherichia coli
GCA_004171205.1	SAFO00000000	SAMN10587049	TZ33_2P	Escherichia coli
GCA_004171175.1	SAFN00000000	SAMN10587050	TZ33_4P	Escherichia coli
GCA_004171165.1	SAFL00000000	SAMN10587052	TZ33_4Pb	Escherichia coli
GCA_004172795.1	SAIL00000000	SAMN10586974	TZ4_1P	Escherichia coli
GCA_004172805.1	SAIN00000000	SAMN10586972	TZ2_1P	Escherichia coli
GCA_004172765.1	SAII00000000	SAMN10586977	TZ4_4P	Escherichia coli
GCA_004172755.1	SAIH00000000	SAMN10586978	TZ4_4Pa	Escherichia coli
GCA_004172745.1	SAIC00000000	SAMN10586983	TZ6_3P	Escherichia coli
GCA_004172725.1	SAHZ00000000	SAMN10586986	TZ10_1P	Escherichia coli
GCA_004172675.1	SAHW00000000	SAMN10586989	TZ11_1Pb	Escherichia coli
GCA_004172645.1	SAHS00000000	SAMN10586993	TZ13_S	Escherichia coli
GCA_004172665.1	SAHT00000000	SAMN10586992	TZ12_1P	Escherichia coli
GCA_004172655.1	SAHP00000000	SAMN10586996	TZ13_3P	Escherichia coli
GCA_004172615.1	SAHO00000000	SAMN10586997	TZ14_1P	Escherichia coli
GCA_004172555.1	SAHK00000000	SAMN10587001	TZ17_S	Escherichia coli
GCA_004172575.1	SAHJ00000000	SAMN10587002	TZ17_1P	Escherichia coli
GCA_004172565.1	SAHH00000000	SAMN10587004	TZ17_4P	Escherichia coli
GCA_004172545.1	SAHG00000000	SAMN10587005	TZ17_4Pa	Escherichia coli
GCA_004172475.1	SAHA00000000	SAMN10587011	TZ19_S	Escherichia coli
GCA_004172525.1	SAHE00000000	SAMN10587007	TZ18_S	Escherichia coli
GCA_004172465.1	SAGU00000000	SAMN10587017	TZ21_2P	Escherichia coli
GCA_004172455.1	SAGZ00000000	SAMN10587012	TZ20_S	Escherichia coli
GCA_004172445.1	SAGX00000000	SAMN10587014	TZ20_2P	Escherichia coli
GCA_004172425.1	SAGS00000000	SAMN10587019	TZ24_3Pa	Escherichia coli
GCA_004172385.1	SAGR00000000	SAMN10587020	TZ25_S	Escherichia coli
GCA_004172355.1	SAGL00000000	SAMN10587026	TZ27_S	Escherichia coli
GCA_004172365.1	SAGN00000000	SAMN10587024	TZ26_2P	Escherichia coli
GCA_004172335.1	SAGM00000000	SAMN10587025	TZ26_3P	Escherichia coli
GCA_004172325.1	SAGG00000000	SAMN10587031	TZ30_2P	Escherichia coli
GCA_004172305.1	SAGE00000000	SAMN10587033	TZ30_4P	Escherichia coli
GCA_004172265.1	SAGB00000000	SAMN10587036	TZ31_1P	Escherichia coli
GCA_004172245.1	SAFS00000000	SAMN10587045	TZ32_7Pa	Escherichia coli
GCA_004172255.1	SAFX00000000	SAMN10587040	TZ32_3P	Escherichia coli
GCA_004172205.1	SAFM00000000	SAMN10587051	TZ33_4Pa	Escherichia coli
GCA_004172215.1	SAFR00000000	SAMN10587046	TZ32_7Pb	Escherichia coli
GCA_004172175.1	SAIO00000000	SAMN10586971	TZ2_S	Escherichia coli
GCA_004172155.1	SAIM00000000	SAMN10586973	TZ2_2P	Escherichia coli
GCA_004172145.1	SAIK00000000	SAMN10586975	TZ4_2P	Escherichia coli
GCA_004172085.1	SAIF00000000	SAMN10586980	TZ5_S	Escherichia coli
GCA_004172115.1	SAIJ00000000	SAMN10586976	TZ4_3P	Escherichia coli
GCA_004172065.1	SAIG00000000	SAMN10586979	TZ4_5P	Escherichia coli
GCA_004172055.1	SAIE00000000	SAMN10586981	TZ6_1P	Escherichia coli
GCA_004172045.1	SAID00000000	SAMN10586982	TZ6_2P	Escherichia coli
GCA_004172015.1	SAIB00000000	SAMN10586984	TZ7_Sa	Escherichia coli
GCA_004172005.1	SAIA00000000	SAMN10586985	TZ7_Sb	Escherichia coli
GCA_004171975.1	SAHY00000000	SAMN10586987	TZ11_S	Escherichia coli
GCA_004171955.1	SAHX00000000	SAMN10586988	TZ11_1P	Escherichia coli
GCA_004171945.1	SAHV00000000	SAMN10586990	TZ11_2P	Escherichia coli
GCA_004171925.1	SAHU00000000	SAMN10586991	TZ12_S	Escherichia coli
GCA_004171885.1	SAHR00000000	SAMN10586994	TZ13_1P	Escherichia coli
GCA_004171875.1	SAHQ00000000	SAMN10586995	TZ13_2P	Escherichia coli
GCA_004171865.1	SAHN00000000	SAMN10586998	TZ14_2P	Escherichia coli
GCA_004171815.1	SAHM00000000	SAMN10586999	TZ14_4P	Escherichia coli
GCA_004171825.1	SAHL00000000	SAMN10587000	TZ15_1P	Escherichia coli
GCA_004171795.1	SAHI00000000	SAMN10587003	TZ17_2P	Escherichia coli
GCA_004171775.1	SAHD00000000	SAMN10587008	TZ18_2P	Escherichia coli
GCA_004171765.1	SAHF00000000	SAMN10587006	TZ17_4Pb	Escherichia coli
GCA_004171725.1	SAHC00000000	SAMN10587009	TZ18_3P	Escherichia coli
GCA_004171715.1	SAHB00000000	SAMN10587010	TZ18_4P	Escherichia coli
GCA_004171705.1	SAGY00000000	SAMN10587013	TZ20_1P	Escherichia coli
GCA_004171675.1	SAGW00000000	SAMN10587015	TZ21_S	Escherichia coli
GCA_004171665.1	SAGV00000000	SAMN10587016	TZ21_1P	Escherichia coli
GCA_004171615.1	SAGP00000000	SAMN10587022	TZ26_S	Escherichia coli
GCA_004171625.1	SAGT00000000	SAMN10587018	TZ24_1P	Escherichia coli
GCA_004171605.1	SAGQ00000000	SAMN10587021	TZ25_1P	Escherichia coli
GCA_004171565.1	SAGK00000000	SAMN10587027	TZ27_1P	Escherichia coli
GCA_004171555.1	SAGO00000000	SAMN10587023	TZ26_1P	Escherichia coli
GCA_004171545.1	SAGJ00000000	SAMN10587028	TZ27_3P	Escherichia coli
GCA_004171505.1	SAGH00000000	SAMN10587030	TZ30_1P	Escherichia coli
GCA_004171515.1	SAGI00000000	SAMN10587029	TZ30_S	Escherichia coli
GCA_004171455.1	SAGF00000000	SAMN10587032	TZ30_3P	Escherichia coli
GCA_004171435.1	SAGD00000000	SAMN10587034	TZ30_5P	Escherichia coli
GCA_004171415.1	SAFZ00000000	SAMN10587038	TZ32_1P	Escherichia coli
GCA_004171425.1	SAGC00000000	SAMN10587035	TZ31_S	Escherichia coli
GCA_004171405.1	SAGA00000000	SAMN10587037	TZ32_S	Escherichia coli
GCA_004171315.1	SAFT00000000	SAMN10587044	TZ32_7P	Escherichia coli
GCA_004171355.1	SAFY00000000	SAMN10587039	TZ32_2P	Escherichia coli
GCA_004171335.1	SAFW00000000	SAMN10587041	TZ32_4P	Escherichia coli
GCA_004171305.1	SAFU00000000	SAMN10587043	TZ32_6P	Escherichia coli
GCA_004171325.1	SAFV00000000	SAMN10587042	TZ32_5P	Escherichia coli
GCA_004171235.1	SAFQ00000000	SAMN10587047	TZ33_S	Escherichia coli
GCA_004171115.1	SAFJ00000000	SAMN10587054	TZ34_S	Escherichia coli
GCA_004171055.1	SAEZ00000000	SAMN10587064	TZ38_1P	Escherichia coli
GCA_004171135.1	SAFK00000000	SAMN10587053	TZ33_5P	Escherichia coli
GCA_004171085.1	SAFA00000000	SAMN10587063	TZ38_S	Escherichia coli
GCA_004171075.1	SAFF00000000	SAMN10587058	TZ36_S	Escherichia coli
GCA_004171045.1	SAEV00000000	SAMN10587068	TZ40_2P	Escherichia coli
GCA_004171005.1	SAEU00000000	SAMN10587069	TZ41_S	Escherichia coli
GCA_004170995.1	SAET00000000	SAMN10587070	TZ41_1P	Escherichia coli
GCA_004170975.1	SAEQ00000000	SAMN10587073	TZ42_2P	Escherichia coli
GCA_004170965.1	SAEO00000000	SAMN10587075	TZ43_1P	Escherichia coli
GCA_004170925.1	SAEL00000000	SAMN10587078	TZ44_2P	Escherichia coli
GCA_004170915.1	SAEJ00000000	SAMN10587080	TZ45_1P	Escherichia coli
GCA_004170905.1	SAEF00000000	SAMN10587084	TZ_132P	Escherichia coli
GCA_004170875.1	SAFI00000000	SAMN10587055	TZ34_1P	Escherichia coli
GCA_004170865.1	SAEE00000000	SAMN10587085	TZ_58P	Escherichia coli
GCA_004170795.1	SAFE00000000	SAMN10587059	TZ37_S	Escherichia coli
GCA_004170805.1	SAFH00000000	SAMN10587056	TZ34_2P	Escherichia coli
GCA_004170785.1	SAFG00000000	SAMN10587057	TZ35_S	Escherichia coli
GCA_004170765.1	SAFC00000000	SAMN10587061	TZ37_1P	Escherichia coli
GCA_004170775.1	SAFD00000000	SAMN10587060	TZ37_Sa	Escherichia coli
GCA_004170695.1	SAEY00000000	SAMN10587065	TZ39_S	Escherichia coli
GCA_004170705.1	SAFB00000000	SAMN10587062	TZ37_2P	Escherichia coli
GCA_004170675.1	SAES00000000	SAMN10587071	TZ42_S	Escherichia coli
GCA_004170685.1	SAEX00000000	SAMN10587066	TZ40_S	Escherichia coli
GCA_004170665.1	SAEW00000000	SAMN10587067	TZ40_1P	Escherichia coli
GCA_004170625.1	SAER00000000	SAMN10587072	TZ42_1P	Escherichia coli
GCA_004170585.1	SAEN00000000	SAMN10587076	TZ44_S	Escherichia coli
GCA_004170595.1	SAEP00000000	SAMN10587074	TZ43_S	Escherichia coli
GCA_004170565.1	SAEM00000000	SAMN10587077	TZ44_1P	Escherichia coli
GCA_004170575.1	SAEK00000000	SAMN10587079	TZ45_S	Escherichia coli
GCA_004170505.1	SAEI00000000	SAMN10587081	TZ45_2P	Escherichia coli
GCA_004170475.1	SAED00000000	SAMN10587086	TZ_109P	Escherichia coli
GCA_004170495.1	SAEH00000000	SAMN10587082	TZ45_3P	Escherichia coli
GCA_004170485.1	SAEG00000000	SAMN10587083	TZ_131P	Escherichia coli
GCA_004170465.1	SAEC00000000	SAMN10587087	TZ_81P	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	39
Data volume, Mbytes	16636

BioProject

Result Filters

Display Settings:

Send to:

Links from SRA

Genomic analysis of porcine faecal commensal E. coli from sows and their offspring

Supplemental Content

Related information

Recent activity