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Accession: PRJNA290784 ID: 290784

Escherichia coli

Genomic sequencing of Escherichia coli bloodstream isolates

See Genome Information for Escherichia coli
To examine how E. coli bloodstream isolates have evolved in a single institution through time.
AccessionPRJNA290784
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
SubmissionRegistration date: 19-Jan-2016
JCVI
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)45794
WGS master199
SRA Experiments198
Protein Sequences970975
Other datasets
BioSample250
Assembly199
Assembly details:
Assembly levelNumber of Assemblies
199
199
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_001519195.1ContigLQRU00000000SAMN03922013
GN02004
GCA_001519145.1ContigLQUQ00000000SAMN03922945
GN02606
GCA_001519135.1ContigLQRV00000000SAMN03922906
GN02005
GCA_001519115.1ContigLQRW00000000SAMN03922907
GN02007
GCA_001519125.1ContigLQRX00000000SAMN03922908
GN02009
GCA_001518365.1ContigLQZU00000000SAMN04388536
GN02740
GCA_001518355.1ContigLQZV00000000SAMN04388537
GN02748
GCA_001521675.1ContigLQWT00000000SAMN04388579
GN05793
GCA_001521655.1ContigLQWS00000000SAMN04388578
GN05779
GCA_001521595.1ContigLQWF00000000SAMN04388565
GN04075
GCA_001521575.1ContigLQVT00000000SAMN04388552
GN03324
GCA_001521635.1ContigLQWI00000000SAMN04388568
GN04153
GCA_001521615.1ContigLQWG00000000SAMN04388566
GN04094
GCA_001521355.1ContigLQUL00000000SAMN03922996
GN02547
GCA_001521335.1ContigLQWE00000000SAMN04388563
GN03838
GCA_001521315.1ContigLQWD00000000SAMN04388562
GN03786
GCA_001521285.1ContigLQUA00000000SAMN03922983
GN02461
GCA_001521275.1ContigLQUH00000000SAMN03922992
GN02531
GCA_001521195.1ContigLQSY00000000SAMN03922951
GN02314
GCA_001521225.1ContigLQTE00000000SAMN03922957
GN02350
GCA_001521205.1ContigLQUN00000000SAMN03922998
GN02560
GCA_001521215.1ContigLQSV00000000SAMN03922935
GN02289
GCA_001521175.1ContigLQUM00000000SAMN03922997
GN02556
GCA_001521435.1ContigLQWJ00000000SAMN04388569
GN04208
GCA_001521415.1ContigLQWN00000000SAMN04388573
GN04306
GCA_001521395.1ContigLQWK00000000SAMN04388570
GN04228
GCA_001521375.1ContigLQWH00000000SAMN04388567
GN04124
GCA_001521555.1ContigLQWQ00000000SAMN04388576
GN05712
GCA_001521535.1ContigLQWR00000000SAMN04388577
GN05734
GCA_001521515.1ContigLQWP00000000SAMN04388575
GN05705
GCA_001521495.1ContigLQWO00000000SAMN04388574
GN04318
GCA_001521475.1ContigLQWL00000000SAMN04388571
GN04255
GCA_001521455.1ContigLQWM00000000SAMN04388572
GN04262
GCA_001520995.1ContigLQVM00000000SAMN04388545
GN02953
GCA_001520975.1ContigLQWA00000000SAMN04388559
GN03599
GCA_001520955.1ContigLQVR00000000SAMN04388550
GN03252
GCA_001520935.1ContigLQVQ00000000SAMN04388549
GN03218
GCA_001520915.1ContigLQVP00000000SAMN04388548
GN03204
GCA_001520895.1ContigLQTP00000000SAMN03922971
GN02411
GCA_001520875.1ContigLQUB00000000SAMN03922985
GN02476
GCA_001520845.1ContigLQVK00000000SAMN04388543
GN02820
GCA_001521155.1ContigLQVJ00000000SAMN04388542
GN02787
GCA_001521135.1ContigLQVD00000000SAMN04388534
GN02699
GCA_001521025.1ContigLQUS00000000SAMN03922948
GN02614
GCA_001521015.1ContigLQVL00000000SAMN04388544
GN02867
GCA_001521115.1ContigLQWC00000000SAMN04388561
GN03661
GCA_001521095.1ContigLQVN00000000SAMN04388546
GN03132
GCA_001521075.1ContigLQTW00000000SAMN03922978
GN02446
GCA_001520835.1ContigLQVE00000000SAMN04388535
GN02707
GCA_001520755.1ContigLQUZ00000000SAMN04388530
GN02669
GCA_001520735.1ContigLQVX00000000SAMN04388556
GN03496
GCA_001520795.1ContigLQVF00000000SAMN04388538
GN02758
GCA_001520715.1ContigLQVY00000000SAMN04388557
GN03545
GCA_001520675.1ContigLQUK00000000SAMN03922995
GN02546
GCA_001520655.1ContigLQVI00000000SAMN04388541
GN02779
GCA_001520635.1ContigLQUY00000000SAMN04388529
GN02657
GCA_001520615.1ContigLQVW00000000SAMN04388555
GN03415
GCA_001520595.1ContigLQVB00000000SAMN04388532
GN02681
GCA_001520575.1ContigLQVA00000000SAMN04388531
GN02674
GCA_001520555.1ContigLQUP00000000SAMN03923000
GN02590
GCA_001520535.1ContigLQUD00000000SAMN03922988
GN02500
GCA_001520515.1ContigLQTR00000000SAMN03922973
GN02422
GCA_001520495.1ContigLQTS00000000SAMN03922974
GN02426
GCA_001519285.1ContigLQSI00000000SAMN03922921
GN02165
GCA_001519245.1ContigLQSU00000000SAMN03922934
GN02277
GCA_001519235.1ContigLQSK00000000SAMN03922923
GN02172
GCA_001519215.1ContigLQRY00000000SAMN03922910
GN02045
GCA_001519355.1ContigLQSQ00000000SAMN03922926
GN02196
GCA_001519335.1ContigLQSP00000000SAMN03922930
GN02247
GCA_001519315.1ContigLQSM00000000SAMN03922925
GN02183
GCA_001519275.1ContigLQSJ00000000SAMN03922922
GN02169
GCA_001519555.1ContigLQSS00000000SAMN03922932
GN02260
GCA_001519525.1ContigLQSO00000000SAMN03922929
GN02235
GCA_001519515.1ContigLQSN00000000SAMN03922928
GN02215
GCA_001519485.1ContigLQVU00000000SAMN04388553
GN03398
GCA_001519475.1ContigLQSH00000000SAMN03922920
GN02163
GCA_001519445.1ContigLQSA00000000SAMN03922912
GN02055
GCA_001519435.1ContigLQRZ00000000SAMN03922911
GN02050
GCA_001519395.1ContigLQST00000000SAMN03922933
GN02270
GCA_001519405.1ContigLQSB00000000SAMN03922914
GN02091
GCA_001519595.1ContigLQTA00000000SAMN03922953
GN02323
GCA_001519575.1ContigLQTK00000000SAMN03922964
GN02380
GCA_001519635.1ContigLQTF00000000SAMN03922958
GN02354
GCA_001519615.1ContigLQUX00000000SAMN04388528
GN02649
GCA_001519715.1ContigLQSD00000000SAMN03922916
GN02099
GCA_001519685.1ContigLQSC00000000SAMN03922915
GN02094
GCA_001519675.1ContigLQSE00000000SAMN03922917
GN02137
GCA_001519645.1ContigLQUW00000000SAMN04388527
GN02639
GCA_001519875.1ContigLQTB00000000SAMN03922954
GN02337
GCA_001519855.1ContigLQSZ00000000SAMN03922952
GN02317
GCA_001519835.1ContigLQSW00000000SAMN03922936
GN02290
GCA_001519815.1ContigLQSX00000000SAMN03922937
GN02298
GCA_001519795.1ContigLQTJ00000000SAMN03922963
GN02375
GCA_001519775.1ContigLQSF00000000SAMN03922918
GN02140
GCA_001519755.1ContigLQSG00000000SAMN03922919
GN02148
GCA_001519735.1ContigLQSR00000000SAMN03922931
GN02254
GCA_001520395.1ContigLQTY00000000SAMN03922980
GN02449
GCA_001520375.1ContigLQTZ00000000SAMN03922982
GN02460
GCA_001520475.1ContigLQVO00000000SAMN04388547
GN03135
GCA_001520455.1ContigLQTT00000000SAMN03922975
GN02427
GCA_001520435.1ContigLQTU00000000SAMN03922976
GN02430
GCA_001520405.1ContigLQTV00000000SAMN03922977
GN02441
GCA_001520355.1ContigLQUE00000000SAMN03922989
GN02501
GCA_001520335.1ContigLQUC00000000SAMN03922986
GN02484
GCA_001520315.1ContigLQTO00000000SAMN03922969
GN02404
GCA_001520295.1ContigLQTH00000000SAMN03922961
GN02363
GCA_001520275.1ContigLQTG00000000SAMN03922959
GN02359
GCA_001520255.1ContigLQVZ00000000SAMN04388558
GN03578
GCA_001520235.1ContigLQUF00000000SAMN03922990
GN02514
GCA_001520215.1ContigLQUG00000000SAMN03922991
GN02529
GCA_001520195.1ContigLQUU00000000SAMN04388525
GN02627
GCA_001520175.1ContigLQVH00000000SAMN04388540
GN02769
GCA_001520135.1ContigLQTN00000000SAMN03922968
GN02393
GCA_001520145.1ContigLQVS00000000SAMN04388551
GN03253
GCA_001520115.1ContigLQTC00000000SAMN03922955
GN02343
GCA_001520095.1ContigLQUT00000000SAMN03922949
GN02620
GCA_001520075.1ContigLQUR00000000SAMN03922947
GN02612
GCA_001520055.1ContigLQTM00000000SAMN03922967
GN02392
GCA_001520035.1ContigLQTL00000000SAMN03922965
GN02388
GCA_001520015.1ContigLQTI00000000SAMN03922962
GN02370
GCA_001519995.1ContigLQUI00000000SAMN03922993
GN02535
GCA_001519975.1ContigLQTQ00000000SAMN03922972
GN02415
GCA_001519945.1ContigLQVC00000000SAMN04388533
GN02690
GCA_001519935.1ContigLQUO00000000SAMN03922999
GN02567
GCA_001519915.1ContigLQUV00000000SAMN04388526
GN02631
GCA_001519895.1ContigLQTD00000000SAMN03922956
GN02345
GCA_001524885.1ContigLRAO00000000SAMN03922946
GN02609
GCA_001524895.1ContigLRAP00000000SAMN04388564
GN04014
GCA_001524905.1ContigLRAN00000000SAMN03922987
GN02487
GCA_001622135.1ContigLVTM00000000SAMN04393309
GN06186
GCA_001622115.1ContigLVTL00000000SAMN04393308
GN06180
GCA_001622105.1ContigLVTK00000000SAMN04393307
GN06168
GCA_001622075.1ContigLVTJ00000000SAMN04393306
GN06156
GCA_001622055.1ContigLVTI00000000SAMN04393305
GN06136
GCA_001622045.1ContigLVTH00000000SAMN04393304
GN06130
GCA_001622025.1ContigLVTG00000000SAMN04393303
GN06124
GCA_001621995.1ContigLVTF00000000SAMN04393302
GN06113
GCA_001621975.1ContigLVTE00000000SAMN04393301
GN06047
GCA_001621965.1ContigLVTD00000000SAMN04393300
GN06039
GCA_001621945.1ContigLVTC00000000SAMN04393299
GN06028
GCA_001621915.1ContigLVTA00000000SAMN04393297
GN05992
GCA_001621885.1ContigLVSZ00000000SAMN04393296
GN05963
GCA_001621855.1ContigLVSY00000000SAMN04393295
GN05918
GCA_001621825.1ContigLVSW00000000SAMN04393293
GN05865
GCA_001621805.1ContigLVSV00000000SAMN04393292
GN05855
GCA_001621755.1ContigLVST00000000SAMN04393290
GN05833
GCA_001621765.1ContigLVSU00000000SAMN04393291
GN05843
GCA_001621745.1ContigLVSS00000000SAMN04393289
GN05829
GCA_001621725.1ContigLVSR00000000SAMN04393288
GN05826
GCA_001621705.1ContigLVSQ00000000SAMN04393287
GN02597
GCA_001621675.1ContigLVSO00000000SAMN04393285
GN05681
GCA_001621645.1ContigLVSN00000000SAMN04393284
GN05625
GCA_001621625.1ContigLVSM00000000SAMN04393283
GN05556
GCA_001621575.1ContigLVSK00000000SAMN04393281
GN05516
GCA_001621585.1ContigLVSL00000000SAMN04393282
GN05554
GCA_001621565.1ContigLVSJ00000000SAMN04393280
GN05509
GCA_001621545.1ContigLVSI00000000SAMN04393279
GN05505
GCA_001621515.1ContigLVSH00000000SAMN04393278
GN05443
GCA_001621505.1ContigLVSF00000000SAMN04393276
GN05377
GCA_001621485.1ContigLVSG00000000SAMN04393277
GN05426
GCA_001621465.1ContigLVSE00000000SAMN04393275
GN05367
GCA_001621435.1ContigLVSD00000000SAMN04393274
GN05274
GCA_001621415.1ContigLVSC00000000SAMN04393273
GN05243
GCA_001621405.1ContigLVSB00000000SAMN04393272
GN05225
GCA_001621385.1ContigLVSA00000000SAMN04393270
GN05128
GCA_001621355.1ContigLVRZ00000000SAMN04393269
GN05121
GCA_001621345.1ContigLVRY00000000SAMN04393268
GN05109
GCA_001621325.1ContigLVRX00000000SAMN04393267
GN05107
GCA_001621305.1ContigLVRW00000000SAMN04393266
GN05044
GCA_001621275.1ContigLVRV00000000SAMN04393265
GN05002
GCA_001621265.1ContigLVRU00000000SAMN04393264
GN04997
GCA_001621245.1ContigLVRT00000000SAMN04393262
GN04805
GCA_001621225.1ContigLVRS00000000SAMN04393261
GN04772
GCA_001621205.1ContigLVRR00000000SAMN04393260
GN04757
GCA_001621165.1ContigLVRP00000000SAMN04393258
GN04729
GCA_001621175.1ContigLVRQ00000000SAMN04393259
GN04741
GCA_001621145.1ContigLVRO00000000SAMN04393257
GN04682
GCA_001621125.1ContigLVRN00000000SAMN04393256
GN04676
GCA_001621075.1ContigLVRK00000000SAMN04393251
GN04592
GCA_001621085.1ContigLVRM00000000SAMN04393255
GN04665
GCA_001621065.1ContigLVRL00000000SAMN04393252
GN04612
GCA_001621005.1ContigLVRI00000000SAMN04393248
GN04542
GCA_001620985.1ContigLVRG00000000SAMN04393246
GN04499
GCA_001620905.1ContigLVRF00000000SAMN04393245
GN04488
GCA_001620925.1ContigLVRC00000000SAMN04393241
GN04428
GCA_001620915.1ContigLVRE00000000SAMN04393244
GN04481
GCA_001620935.1ContigLVRD00000000SAMN04393243
GN04472
GCA_001621665.2ContigLVSP00000000SAMN04393286
GN05696
GCA_001621835.2ContigLVSX00000000SAMN04393294
GN05885
GCA_001620995.2ContigLVRH00000000SAMN04393247
GN04540
GCA_001519365.2ContigLQSL00000000SAMN03922924
GN02175
GCA_001520775.2ContigLQVV00000000SAMN04388554
GN03409
GCA_001521695.2ContigLQWB00000000SAMN04388560
GN03624
GCA_001621035.2ContigLVRJ00000000SAMN04393250
GN04563
GCA_001521055.2ContigLQTX00000000SAMN03922979
GN02448
GCA_001520815.2ContigLQVG00000000SAMN04388539
GN02766
GCA_001520695.2ContigLQUJ00000000SAMN03922994
GN02545
GCA_001621905.2ContigLVTB00000000SAMN04393298
GN06007
GCA_003862555.1ContigRRCS00000000SAMN04393208
GN02629
SRA Data Details
ParameterValue
Data volume, Gbases189
Data volume, Mbytes78859

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