Vibrio cholerae (ID 339415) - BioProject

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Accession: PRJNA339415 ID: 339415

Vibrio cholerae

Vibrio cholerae Genome sequencing and assembly

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784 additional projects are related by organism.

Water-borne Vibrio cholerae bacteria can cause fatal cholera diarrhea. We report whole genome, ultra-deep sequencing of 24 non-clinical isolates from diverse locales, which may reveal diverse natural transformation and Type VI Secretion genes promoting fitness, pathogenicity, and exchange between bacteria.

Accession	PRJNA339415
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Vibrio cholerae[Taxonomy ID: 666] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae
Publications	Bernardy EE et al., "Diversity of Clinical and Environmental Isolates of Vibrio cholerae in Natural Transformation and Contact-Dependent Bacterial Killing Indicative of Type VI Secretion System Activity.", Appl Environ Microbiol, 2016 May;82(9):2833-2842
Grants	"The regulation of natural transformation in Vibrio" (Grant ID MCB-1149925, National Science Foundation)
Submission	Registration date: 15-Sep-2016 Georgia Institute of Technology
Related Resources	Project home Scripts and data
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	4230
WGS master	26
SRA Experiments	26
Protein Sequences	92749
Publications
PubMed	1
PMC	1
Other datasets
BioSample	26
Assembly	26

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

26
26

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_001729195.1	MIKK00000000	SAMN05590406	VC22	Vibrio cholerae
GCA_001729185.1	MIKI00000000	SAMN05590403	2740-80	Vibrio cholerae 2740-80
GCA_001729155.1	MIKJ00000000	SAMN05590404	MZO-2	Vibrio cholerae
GCA_001729125.1	MIKH00000000	SAMN05590402	857	Vibrio cholerae
GCA_001743085.1	MIZG00000000	SAMN05590420	3223-74	Vibrio cholerae
GCA_001857545.1	MIPN00000000	SAMN05590436	V52	Vibrio cholerae V52
GCA_001857515.1	MIPM00000000	SAMN05590438	HE46	Vibrio cholerae
GCA_001857505.1	MIPL00000000	SAMN05590437	3568-07	Vibrio cholerae
GCA_001857485.1	MIPK00000000	SAMN05590426	TP	Vibrio cholerae
GCA_001857435.1	MIPI00000000	SAMN05590424	C6706	Vibrio cholerae C6706
GCA_001857425.1	MIPH00000000	SAMN05590423	2633-78	Vibrio cholerae
GCA_001857405.1	MIPG00000000	SAMN05590422	1074-78	Vibrio cholerae
GCA_001857365.1	MIPF00000000	SAMN05590421	3225-74	Vibrio cholerae
GCA_001857345.1	MIPE00000000	SAMN05590419	2523-87	Vibrio cholerae
GCA_001857355.1	MIPD00000000	SAMN05590418	2497-86	Vibrio cholerae
GCA_001857325.1	MIPC00000000	SAMN05590417	1496-86	Vibrio cholerae
GCA_001857305.1	MIPB00000000	SAMN05590416	2479-86	Vibrio cholerae
GCA_001857285.1	MIPA00000000	SAMN05590415	692-79	Vibrio cholerae
GCA_001857265.1	MIOZ00000000	SAMN05590414	3272-78	Vibrio cholerae
GCA_001857245.1	MIOY00000000	SAMN05590413	2512-86	Vibrio cholerae
GCA_001857225.1	MIOX00000000	SAMN05590411	2631-78	Vibrio cholerae
GCA_001857165.1	MIOT00000000	SAMN05590407	VC48	Vibrio cholerae
GCA_001857175.1	MIOV00000000	SAMN05590409	VC56	Vibrio cholerae
GCA_001857155.1	MIOU00000000	SAMN05590408	VC53	Vibrio cholerae
GCA_001857145.1	MIOW00000000	SAMN05590410	2559-78	Vibrio cholerae
GCA_001857455.1	MIPJ00000000	SAMN05590425	SIO	Vibrio paracholerae

SRA Data Details

Parameter	Value
Data volume, Gbases	51
Data volume, Mbytes	20939

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Vibrio cholerae

Vibrio cholerae Genome sequencing and assembly

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