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Accession: PRJNA934726 ID: 934726

Enterobacterales

Sequecing and assembly of colisitin-resistant mcr-1 Enterobacterales isolates from Lower Saxony, Germany

This study investigated the prevalence of colistine-resistant and carbapenemase-producing Enterobacterales (Col-E, CPE) on approx. More...

Accession	PRJNA934726
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Enterobacterales[Taxonomy ID: 91347] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales
Publications	Nordhoff K et al., "Epidemiology and zoonotic transmission of mcr-positive and carbapenemase-producing Enterobacterales on German turkey farms.", Front Microbiol, 2023;14:1183984
Grants	"#1Health-PREVENT" (Grant ID 01KI1727A, German Federal Ministry for Education and Research) "EurHealth-1Health" (Grant ID EU/INTERREG VA-681377, European Union / INTERREG V A)
Submission	Registration date: 15-Nov-2023 Research Network Zoonotic Infectious Diseases - Niedersaechsisches Landesgesundheitsamt
Relevance	One-Health (agricultural and medical)

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	17
SRA Experiments	17
Publications
PubMed	1
PMC	1
Other datasets
BioSample	17
Assembly	17

Assembly details:

Assembly level

Number of Assemblies

Scaffold

Contig

1
16
17

Assembly	Level	WGS	BioSample	Strain	Taxonomy
GCA_033684525.1		JAWNAV000000000	SAMN37779079	Hum4b	Escherichia coli
GCA_033684535.1		JAWNAX000000000	SAMN37779077	Hum3b	Escherichia coli
GCA_033684425.1		JAWNAT000000000	SAMN37779081	Vet1	Escherichia coli
GCA_033684405.1		JAWNAP000000000	SAMN37779085	Vet5	Escherichia coli
GCA_033684385.1		JAWNAS000000000	SAMN37779082	Vet2	Escherichia coli
GCA_033684365.1		JAWNAQ000000000	SAMN37779084	Vet4	Escherichia coli
GCA_033684345.1		JAWNAR000000000	SAMN37779083	Vet3	Escherichia coli
GCA_033684805.1		JAWNBA000000000	SAMN37779074	Hum1	Escherichia coli
GCA_033684725.1		JAWNAZ000000000	SAMN37779075	Hum2	Escherichia coli
GCA_033684645.1		JAWNAW000000000	SAMN37779078	Hum4a	Escherichia coli
GCA_033684625.1		JAWNAY000000000	SAMN37779076	Hum3a	Escherichia coli
GCA_033684585.1		JAWNAU000000000	SAMN37779080	Hum4c	Escherichia coli
GCA_033684225.1		JAWNAN000000000	SAMN37779087	Vet7	Escherichia coli
GCA_033684205.1		JAWNAM000000000	SAMN37779088	Vet8	Escherichia coli
GCA_033684185.1		JAWNAL000000000	SAMN37779089	Vet9	Escherichia coli
GCA_033684165.1		JAWNAO000000000	SAMN37779086	Vet6	Escherichia coli
GCA_033684145.1		JAWNAK000000000	SAMN37779090	Vet10	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	8
Data volume, Mbytes	3830

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Enterobacterales
Enterobacterales
Sequecing and assembly of colisitin-resistant mcr-1 Enterobacterales isolates from Lower Saxony, Germany

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