Pig Skin & Wound Microbiome (ID 1055114) - BioProject

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Accession: PRJNA1055114 ID: 1055114

Pig Skin & Wound Microbiome

Multi-omics investigation of the pig skin and wound microbiome

Accession	PRJNA1055114
Data Type	Genome sequencing
Organism	skin metagenome[Taxonomy ID: 1338477] unclassified sequences; metagenomes; organismal metagenomes; skin metagenome
Publications	De La Cruz KF et al., "The porcine skin microbiome exhibits broad fungal antagonism.", Fungal Genet Biol, 2024 Aug;173:103898
Grants	"Elucidating the Role of Microbial Community Dynamics in Wound Repair and Regeneration" (Grant ID R35 GM137828, National Institute of General Medical Sciences)
Submission	Registration date: 20-Dec-2023 University of Wisconsin - Madison
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	25
SRA Experiments	318
Publications
PubMed	1
PMC	1
Other datasets
BioSample	318
Assembly	25

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

25
25

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_040946305.1	JAYWLY000000000	SAMN39131987	LK2640	Corynebacterium camporealensis
GCA_040946325.1	JAYWLZ000000000	SAMN39131988	LK2538	Corynebacterium phoceense
GCA_040946405.1	JAYWLR000000000	SAMN39131980	LK2510	Corynebacterium sp. LK2510
GCA_040946225.1	JAYWME000000000	SAMN39131993	LK2514	Corynebacterium sp. LK2514
GCA_040946545.1	JAYWLL000000000	SAMN39131974	LK2521	Corynebacterium sp. LK2521
GCA_040946155.1	JAYWMF000000000	SAMN39131994	LK2522	Corynebacterium sp. LK2522
GCA_040946145.1	JAYWMG000000000	SAMN39131995	LK2532	Corynebacterium sp. LK2532
GCA_040946505.1	JAYWLP000000000	SAMN39131978	LK2536	Corynebacterium sp. LK2536
GCA_040946485.1	JAYWLQ000000000	SAMN39131979	LK2537	Corynebacterium sp. LK2537
GCA_040946565.1	JAYWLM000000000	SAMN39131975	LK2567	Corynebacterium sp. LK2567
GCA_040946585.1	JAYWLN000000000	SAMN39131976	LK2582	Corynebacterium sp. LK2582
GCA_040946105.1	JAYWMH000000000	SAMN39131996	LK2590	Corynebacterium sp. LK2590
GCA_040946085.1	JAYWMI000000000	SAMN39131997	LK2591	Corynebacterium sp. LK2591
GCA_040946125.1	JAYWMJ000000000	SAMN39131998	LK2596	Corynebacterium sp. LK2596
GCA_040946525.1	JAYWLO000000000	SAMN39131977	LK2602	Corynebacterium sp. LK2602
GCA_040946285.1	JAYWMA000000000	SAMN39131989	LK2569	Corynebacterium xerosis
GCA_040946365.1	JAYWLV000000000	SAMN39131984	LK2660	Kocuria carniphila
GCA_040946445.1	JAYWLT000000000	SAMN39131982	LK2598	Kocuria carniphila
GCA_040946415.1	JAYWLU000000000	SAMN39131983	LK2625	Kocuria carniphila
GCA_040946385.1	JAYWLW000000000	SAMN39131985	LK2664	Micrococcus endophyticus
GCA_040946265.1	JAYWMC000000000	SAMN39131991	LK2561	Paenibacillus glucanolyticus
GCA_040946345.1	JAYWLX000000000	SAMN39131986	LK2492	Rothia sp. LK2492
GCA_040946465.1	JAYWLS000000000	SAMN39131981	LK2588	Rothia sp. LK2588
GCA_040946205.1	JAYWMD000000000	SAMN39131992	LK2545	Staphylococcus epidermidis
GCA_040946245.1	JAYWMB000000000	SAMN39131990	LK2570	Viridibacillus arvi

SRA Data Details

Parameter	Value
Data volume, Gbases	16
Data volume, Mbytes	7200

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