ID 561493 - BioProject

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Accession: PRJNA561493 ID: 561493

Nosocomial infection.

Main pathogens causing nosocomial infections in intensive care units.

Accession	PRJNA561493
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 22-Aug-2019 N.F.Gamaleya National Research Center for Epidemiology and Microbiology
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	205
WGS master	128
Genomic DNA	77
SRA Experiments	168
Protein Sequences	119557
Other datasets
BioSample	169
Assembly	151

Assembly details:

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Assembly level

Number of Assemblies

3
21
127
151

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_027529765.1	JAPZVG000000000		SAMN32339301	SCCH132:Ach223652	Achromobacter dolens
GCA_028462365.1	JAQOUC000000000		SAMN32904308	SCCH133 Ach223935	Achromobacter ruhlandii
GCA_027529905.1	JAPZVL000000000		SAMN32340370	SCCH140:Ach223725	Achromobacter ruhlandii
GCA_027529595.1	JAPZVH000000000		SAMN32339596	SCCH135:Ach223918	Achromobacter ruhlandii
GCA_028745645.1	JAQZZN000000000		SAMN32904310	SCCH137 Ach2231057	Achromobacter ruhlandii
GCA_028462375.2		1	SAMN31654599	SCCH94 Ach2121706	Achromobacter ruhlandii
GCA_027529585.1	JAPZVF000000000		SAMN32339288	SCCH131:Ach223717	Achromobacter xylosoxidans
GCA_027529815.1	JAPZVI000000000		SAMN32340207	SCCH136:Ach223948	Achromobacter xylosoxidans
GCA_027529805.1	JAPZVK000000000		SAMN32340367	SCCH139:Ach223950	Achromobacter xylosoxidans
GCA_027529565.1	JAPZVJ000000000		SAMN32340362	SCCH138:Ach223910	Achromobacter xylosoxidans
GCA_028462445.1	JAQOUD000000000		SAMN32904309	SCCH134 Ach223682	Achromobacter xylosoxidans
GCA_028745525.1	JAQZZM000000000		SAMN31178866	SCCH77 Ach922817	Achromobacter xylosoxidans
GCA_017584105.1		2	SAMN18276099	GIMC5510:ABT-897-17	Acinetobacter baumannii
GCA_040539445.1	JBEWXG000000000		SAMN42021367	GIMC5519:ABT28080324_2	Acinetobacter baumannii
GCA_040539435.1	JBEWXA000000000		SAMN42003048	GIMC5518:ABTBAL005	Acinetobacter baumannii
GCA_042136425.1	JBHHKL000000000		SAMN43782010	GIMC5521:ABT-B0270	Acinetobacter baumannii
GCA_033378915.2		2	SAMN31178860	SCCH68:Ab991128	Acinetobacter baumannii
GCA_030705365.1	JAUZNG000000000		SAMN31654607	GIMC5514:ABT-52ICU-4H	Acinetobacter baumannii
GCA_030705335.1	JAUZNE000000000		SAMN31029728	GIMC5512-ABT-096310	Acinetobacter baumannii
GCA_030705385.1	JAUZNF000000000		SAMN31178861	GIMC5513-ABT-053183	Acinetobacter baumannii
GCA_030541845.1	JAUNZV000000000		SAMN36470489	GIMC5517:ABTB070323	Acinetobacter baumannii
GCA_030541725.1	JAUNZU000000000		SAMN36470488	GIMC5516:ABT114240423/4	Acinetobacter baumannii
GCA_033378945.1	JAUOBZ000000000		SAMN31178857	SCCH65:Ab561520	Acinetobacter baumannii
GCA_033378905.1	JAUOCA000000000		SAMN31178859	SCCH67:Ab99974	Acinetobacter baumannii
GCA_029814405.1		3	SAMN31178862	GIMC5511:ABT-AB4	Acinetobacter baumannii
GCA_029814355.1		2	SAMN12618962	GIMC5506:ABT-3Ts52	Acinetobacter baumannii
GCA_029814335.1		3	SAMN31178858	SCCH66:Ab99738	Acinetobacter baumannii
GCA_029581555.1		3	SAMN12618963	GIMC5508:ABT-3Ts65	Acinetobacter baumannii
GCA_025732115.1		2	SAMN31029726	GIMC5509:ABT-52Ts19	Acinetobacter baumannii
GCA_025732095.1		2	SAMN31029727	GIMC5507:ABT-52Ts18	Acinetobacter baumannii
GCA_041205585.1	JBGEVM000000000		SAMN42622154	GIMC4612:Bcn34P14	Burkholderia cenocepacia
GCA_030541755.1	JAUNZW000000000		SAMN36470476	SCCH141:Bcc233621	Burkholderia cenocepacia
GCA_028462345.1	JAQOTX000000000		SAMN31654597	GIMC4599 Bcn23P15	Burkholderia cenocepacia
GCA_028462305.2		3	SAMN31654598	SCCH90 Bcn202840	Burkholderia cepacia
GCA_030541745.1	JAUNZX000000000		SAMN36470477	SCCH142Bcc233644	Burkholderia cepacia
GCA_028462525.1	JAQOTZ000000000		SAMN31654600	SCCH61 Bgd92-3601	Burkholderia gladioli
GCA_041205685.1	JBGEWG000000000		SAMN42722857	GIMC4611:Bmv34P4	Burkholderia multivorans
GCA_041205645.1	JBGEWH000000000		SAMN42722858	GIMC1301:EB-B5375	Enterobacter hormaechei
GCA_042136095.1	JBHHJZ000000000		SAMN43545318	GIMC505:Enc-366	Enterococcus faecalis
GCA_040539295.1	JBEWXF000000000		SAMN42021369	GIMC1406:EC_Lstone02	Escherichia coli
GCA_040539635.1	JBEWXB000000000		SAMN42003053	GIMC1404:EC_34P55	Escherichia coli
GCA_040539585.1	JBEWXE000000000		SAMN42021368	GIMC1405:EC_Lstone01	Escherichia coli
GCA_039414275.1	JBCIYY000000000		SAMN39926805	GIMC1403:EC_33P43	Escherichia coli
GCA_030519795.1	JAUMJC000000000		SAMN36470475	GIMC1402:EC_33P15	Escherichia coli
GCA_030732145.1	JAVAMT000000000		SAMN31848138	GIMC1400:EC_171	Escherichia coli
GCA_030732105.1	JAVAMU000000000		SAMN31848139	GIMC1401:EC_CNL19	Escherichia coli
GCA_019856575.1		3	SAMN12618964	GIMC1002:Kpn-3Ts64	Klebsiella pneumoniae
GCA_040566585.1	JBEWWP000000000		SAMN42003038	GIMC1044:Kpn152310323	Klebsiella pneumoniae
GCA_040539235.1	JBEWWU000000000		SAMN42003043	GIMC1049:Kpn23150124_1	Klebsiella pneumoniae
GCA_040539405.1	JBEWWR000000000		SAMN42003040	GIMC1046:Kpn111240423	Klebsiella pneumoniae
GCA_040539555.1	JBEWWX000000000		SAMN42003046	GIMC1052:Kpn33260224	Klebsiella pneumoniae
GCA_040539535.1	JBEWWY000000000		SAMN42003047	GIMC1053:Kpn93270224	Klebsiella pneumoniae
GCA_040539515.1	JBEWWT000000000		SAMN42003042	GIMC1048:Kpn17051223	Klebsiella pneumoniae
GCA_040539495.1	JBEWWQ000000000		SAMN42003039	GIMC1045:Kpn60130323	Klebsiella pneumoniae
GCA_040539475.1	JBEWWW000000000		SAMN42003045	GIMC1051:Kpn66180224	Klebsiella pneumoniae
GCA_040539575.1	JBEWWZ000000000		SAMN42003037	GIMC1043:KpnB3339	Klebsiella pneumoniae
GCA_040539565.1	JBEWWV000000000		SAMN42003044	GIMC1050:Kpn25160124	Klebsiella pneumoniae
GCA_040539685.1	JBEWWS000000000		SAMN42003041	GIMC1047:Kpn9030923	Klebsiella pneumoniae
GCA_038929655.1	JBBYJC000000000		SAMN40755482	GIMC1029:Kpn67211123	Klebsiella pneumoniae
GCA_038929615.1	JBBYJB000000000		SAMN40755481	GIMC1028:Kpn43161023	Klebsiella pneumoniae
GCA_038929595.1	JBBYJA000000000		SAMN40755480	GIMC1027:Kpn91260623	Klebsiella pneumoniae
GCA_038929555.1	JBBYIY000000000		SAMN40755478	GIMC1025:Kpn54130623	Klebsiella pneumoniae
GCA_039503155.1	JBBYIZ000000000		SAMN40755479	GIMC1026:Kpn59140623	Klebsiella pneumoniae
GCA_038432245.1	JBCDXC000000000		SAMN40755491	GIMC1038:Kpn64171223	Klebsiella pneumoniae
GCA_038432335.1	JBCDXD000000000		SAMN40755492	GIMC1039:Kpn69181223	Klebsiella pneumoniae
GCA_038432295.1	JBCDXE000000000		SAMN40755493	GIMC1040:Kpn16051223	Klebsiella pneumoniae
GCA_038432305.1	JBCDXF000000000		SAMN40755494	GIMC1041:Kpn48161123	Klebsiella pneumoniae
GCA_038419885.1	JBCAQZ000000000		SAMN40755488	GIMC1035:Kpn46151123	Klebsiella pneumoniae
GCA_038419835.1	JBCAQW000000000		SAMN40755485	GIMC1032:Kpn69181223	Klebsiella pneumoniae
GCA_038419825.1	JBCAQX000000000		SAMN40755486	GIMC1033:Kpn24050523	Klebsiella pneumoniae
GCA_038419815.1	JBCAQY000000000		SAMN40755487	GIMC1034:Kpn28111123	Klebsiella pneumoniae
GCA_038419775.1	JBCAQV000000000		SAMN40755484	GIMC1031:Kpn18051223	Klebsiella pneumoniae
GCA_038419755.1	JBCAQU000000000		SAMN40755483	GIMC1030:Kpn11041223	Klebsiella pneumoniae
GCA_039674885.1	JBDJOT000000000		SAMN40755489	GIMC1036:Kpn98291123	Klebsiella pneumoniae
GCA_039674865.1	JBDJOU000000000		SAMN40755490	GIMC1037:Kpn34170124	Klebsiella pneumoniae
GCA_041205305.1	JBGEWF000000000		SAMN42622155	GIMC1042:Kpn34P66	Klebsiella pneumoniae
GCA_041949905.1	JBHGBY000000000		SAMN43545317	GIMC1055:Kpn53130623	Klebsiella pneumoniae
GCA_031732495.1	JAVMRA000000000		SAMN37389456	GIMC1023:Kpn-BS19	Klebsiella pneumoniae
GCA_030662235.1	JAUTYH000000000		SAMN31157668	SCCH118:Kpn2192074	Klebsiella pneumoniae
GCA_030661975.1	JAUTYE000000000		SAMN31157674	SCCH115:Kpn2161588	Klebsiella pneumoniae
GCA_030661955.1	JAUTYF000000000		SAMN31157675	SCCH116:Kpn219947	Klebsiella pneumoniae
GCA_030662055.1	JAUTYB000000000		SAMN31157669	SCCH110:Kpn216562	Klebsiella pneumoniae
GCA_030662035.1	JAUTYC000000000		SAMN31157670	SCCH111:Kpn216565	Klebsiella pneumoniae
GCA_030661995.1	JAUTYG000000000		SAMN31157676	SCCH117:Kpn219948	Klebsiella pneumoniae
GCA_030662095.1	JAUTYD000000000		SAMN31157672	SCCH113:Kpn2161522	Klebsiella pneumoniae
GCA_030649715.1	JAUTIQ000000000		SAMN31157666	SCCH86:Kpn207262	Klebsiella pneumoniae
GCA_030649795.1	JAUTIO000000000		SAMN31157664	SCCH84:Kpn2082401	Klebsiella pneumoniae
GCA_030649655.1	JAUTIN000000000		SAMN31157663	SCCH83:Kpn962750	Klebsiella pneumoniae
GCA_030651665.1	JAUTIP000000000		SAMN31157665	SCCH85:Kpn2082397	Klebsiella pneumoniae
GCA_030544435.1	JAUMJB000000000		SAMN36470484	GIMC1022:KpnCh030223	Klebsiella pneumoniae
GCA_030519775.1	JAUMIZ000000000		SAMN36470482	GIMC1020:Kpn28060523	Klebsiella pneumoniae
GCA_030519755.1	JAUMJA000000000		SAMN36470483	GIMC1021:Kpn83180423	Klebsiella pneumoniae
GCA_030519715.1	JAUMIY000000000		SAMN36470480	GIMC1018:Kpn107210323	Klebsiella pneumoniae
GCA_030519725.1	JAUMIW000000000		SAMN36470478	GIMC1016:Kpn19040323	Klebsiella pneumoniae
GCA_030519675.1	JAUMIX000000000		SAMN36470479	GIMC1017:Kpn29100223	Klebsiella pneumoniae
GCA_030519575.1	JAUMKK000000000		SAMN36470481	GIMC1019:Kpn87300323	Klebsiella pneumoniae
GCA_033425465.1	JAUPHX000000000		SAMN31157661	SCCH81:Kpn881654	Klebsiella pneumoniae
GCA_033425475.1	JAUPHY000000000		SAMN31157662	SCCH82:Kpn98834	Klebsiella pneumoniae
GCA_033425325.1	JAUPHW000000000		SAMN31157660	SCCH80:Kpn881345	Klebsiella pneumoniae
GCA_033425335.1	JAUPHU000000000		SAMN31157658	SCCH72:Kpn881723	Klebsiella pneumoniae
GCA_033425305.1	JAUPHT000000000		SAMN31157657	SCCH71:Kpn863165	Klebsiella pneumoniae
GCA_033425265.1	JAUPHV000000000		SAMN31157659	SCCH73:Kpn96857	Klebsiella pneumoniae
GCA_033425275.1	JAUPHS000000000		SAMN31157656	SCCH70:Kpn76815	Klebsiella pneumoniae
GCA_033378925.1	JAUOCC000000000		SAMN31157655	SCCH69:Kpn69138	Klebsiella pneumoniae
GCA_029814315.1		8	SAMN31157671	SCCH112:Kpn2161521	Klebsiella pneumoniae
GCA_029814295.1		6	SAMN31157667	SCCH87:Kpn2182174	Klebsiella pneumoniae
GCA_029814385.1		6	SAMN31654602	GIMC1008:Kpn-20467	Klebsiella pneumoniae
GCA_029814445.1		5	SAMN31654606	GIMC1010:Kpn-52ICU-7H	Klebsiella pneumoniae
GCA_029814425.1		4	SAMN31157673	SCCH114:Kpn2161584	Klebsiella pneumoniae
GCA_029814195.1		1	SAMN31654601	GIMC1007:Kpn-H001	Klebsiella pneumoniae
GCA_029623595.1		8	SAMN31654605	GIMC1009:Kpn-52ICU-2H	Klebsiella pneumoniae
GCA_029581535.1		4	SAMN31029729	GIMC1006:Kpn-102106	Klebsiella pneumoniae
GCA_029581495.1		5	SAMN31157677	GIMC1005:Kpn52KP4	Klebsiella pneumoniae
GCA_028462385.1	JAQOUA000000000		SAMN31655766	SCCH130 Lau2261318	Lautropia mirabilis
GCA_041205705.1	JBGEWJ000000000		SAMN42722860	GIMC6701:Pr-B0199	Proteus mirabilis
GCA_030410115.2		1	SAMN12618960	GIMC5017:PA3Ts24	Pseudomonas aeruginosa
GCA_040513845.1	JBEVAR000000000		SAMN42003051	GIMC5055:PA33P35	Pseudomonas aeruginosa
GCA_040513855.1	JBEVAP000000000		SAMN42003050	GIMC5057:PA-B1799	Pseudomonas aeruginosa
GCA_040513425.1	JBEVAQ000000000		SAMN42003049	GIMC5058:PABAL006	Pseudomonas aeruginosa
GCA_040513475.1	JBEVAS000000000		SAMN42003052	GIMC5056:PA34P22	Pseudomonas aeruginosa
GCA_033378895.1	JAUOBY000000000		SAMN31178870	SCCH89:Pa216599	Pseudomonas aeruginosa
GCA_030544405.1	JAUMJF000000000		SAMN36470487	GIMC5044:PAB070323	Pseudomonas aeruginosa
GCA_030544385.1	JAUMJD000000000		SAMN36470485	GIMC5042:PA114240423/1	Pseudomonas aeruginosa
GCA_030544365.1	JAUMJE000000000		SAMN36470486	GIMC5043:PA114240423/3	Pseudomonas aeruginosa
GCA_030541885.1	JAUNZZ000000000		SAMN31178864	SCCH75:Pa92117	Pseudomonas aeruginosa
GCA_030541895.1	JAUOAD000000000		SAMN31178869	SCCH88:Pa216553	Pseudomonas aeruginosa
GCA_030541865.1	JAUOAC000000000		SAMN31178868	SCCH79:Pa202838	Pseudomonas aeruginosa
GCA_030541825.1	JAUOAB000000000		SAMN31178867	SCCH78:Pa923507	Pseudomonas aeruginosa
GCA_030541805.1	JAUOAA000000000		SAMN31178865	SCCH76:Pa92992	Pseudomonas aeruginosa
GCA_031732535.1	JAVMRB000000000		SAMN37389457	GIMC5048:PA-BS20	Pseudomonas aeruginosa
GCA_031732515.1	JAVMRC000000000		SAMN37389458	GIMC5045:PA33P25	Pseudomonas aeruginosa
GCA_031731655.1	JAVMRD000000000		SAMN37389459	GIMC5047:PA33P30	Pseudomonas aeruginosa
GCA_030284605.1		1	SAMN31029730	GIMC5036:PA150608	Pseudomonas aeruginosa
GCA_030411385.1	JAUFRP000000000		SAMN31781821	GIMC5041:PA431-2	Pseudomonas aeruginosa
GCA_030411375.1	JAUFRO000000000		SAMN31781820	GIMC5040:PA85B	Pseudomonas aeruginosa
GCA_030411355.1	JAUFRN000000000		SAMN31654610	GIMC5039:PA-52ICU-7E	Pseudomonas aeruginosa
GCA_030411015.1	JAUFRS000000000		SAMN31178873	SCCH32:Pa82816_2	Pseudomonas aeruginosa
GCA_030410985.1	JAUFRW000000000		SAMN31178863	SCCH74:Pa62222	Pseudomonas aeruginosa
GCA_030410975.1	JAUFRV000000000		SAMN31178876	GIMC5032:PA28P36	Pseudomonas aeruginosa
GCA_030410955.1	JAUFRU000000000		SAMN31178875	SCCH40:Pa821209	Pseudomonas aeruginosa
GCA_030410935.1	JAUFRT000000000		SAMN31178874	SCCH35:Pa823476_1	Pseudomonas aeruginosa
GCA_030410195.1	JAUFRL000000000		SAMN31654608	GIMC5037:PA-52ICU-5H	Pseudomonas aeruginosa
GCA_030410175.1	JAUFRK000000000		SAMN12618961	GIMC5018:PA3Ts44	Pseudomonas aeruginosa
GCA_030410215.1	JAUFRM000000000		SAMN31654609	GIMC5038:PA-52ICU-5E	Pseudomonas aeruginosa
GCA_030410875.1	JAUFRR000000000		SAMN31178872	SCCH32:Pa82816_1	Pseudomonas aeruginosa
GCA_030410895.1	JAUFRQ000000000		SAMN31178871	SCCH59:Pa92832	Pseudomonas aeruginosa
GCA_025734455.1		1	SAMN28954288	GIMC5035:PA21/2013	Pseudomonas aeruginosa
GCA_041205725.1	JBGEWI000000000		SAMN42722859	GIMC6601:Ser-B0378	Serratia marcescens
GCA_041222725.1		1	SAMN43030374	GIMC7004:SaO-15	Staphylococcus aureus
GCA_040539655.1	JBEWXD000000000		SAMN42003055	GIMC7006:SaB0709	Staphylococcus aureus
GCA_040539675.1	JBEWXC000000000		SAMN42003054	GIMC7005SaB0465	Staphylococcus aureus

SRA Data Details

Parameter	Value
Data volume, Gbases	312
Data volume, Tbytes	0.14

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Nosocomial infection.

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