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Accession: PRJNA505808 ID: 505808

Porphyromonas somerae strain:ATCC BAA-1230

Single-cell transcriptome sequencing of Porphyromonas somerae

See Genome Information for Porphyromonas somerae
Transcriptome sequencing from single cells of Porphyromonas somerae ATCC BAA-1230 (DSM 23386), using a microfluidic device for extraction and amplification, plus a control from a bulk culture of P. somerae.
AccessionPRJNA505808
Data TypeTranscriptome or Gene expression
ScopeMonoisolate
OrganismPorphyromonas somerae[Taxonomy ID: 322095]
Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas; Porphyromonas somerae
PublicationsLiu Y et al., "Bacterial Single Cell Whole Transcriptome Amplification in Microfluidic Platform Shows Putative Gene Expression Heterogeneity.", Anal Chem, 2019 Jul 2;91(13):8036-8044
SubmissionRegistration date: 16-Nov-2018
Mayo Clinic
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments4
Publications
PubMed1
PMC1
Other datasets
BioSample4
SRA Data Details
ParameterValue
Data volume, Gbases35
Data volume, Mbytes14429

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