Bacteria (ID 493554) - BioProject

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Accession: PRJNA493554 ID: 493554

Bacteria

Probiogenomics

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This project is a component of the The Lactobacillus genus, a use case for Bactopia.

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216 additional projects are components of the The Lactobacillus genus, a use case for Bactopia..

Probiotics are widely used as health-

promoting bacteria, therefore they are of

interest with respect to their genomics, molecular biology and

genetics. More...

Accession	PRJNA493554
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Sulthana A et al., "Whole-Genome Shotgun Sequencing and Characterization of Probiotic Strain Clostridium butyricum UBCB 70 To Assess Its Safety.", Microbiol Resour Announc, 2019 Jan;8(5)
Submission	Registration date: 7-Oct-2018 Unique Biotech Limited
Relevance	Industrial

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1542
WGS master	25
SRA Experiments	13
Protein Sequences	40642
Publications
PubMed	1
PMC	1
Other datasets
BioSample	34
Assembly	25

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

13
12
25

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_005047705.1	SULF00000000	SAMN11381951	UBBLI-30	Bacillus paralicheniformis
GCA_003710285.1	RDEZ00000000	SAMN10246063	UBBS-14	Bacillus subtilis
GCA_003970855.1	RWKO00000000	SAMN10516502	UBBLa 70	Bifidobacterium animalis subsp. lactis
GCA_016307165.1	JADPYV000000000	SAMN16793263	UBBB-55	Bifidobacterium bifidum
GCA_004802595.1	SSOQ00000000	SAMN11381953	UBBR-01	Bifidobacterium breve
GCA_004803425.1	SSWL00000000	SAMN11370925	UBBI-01	Bifidobacterium longum subsp. infantis
GCA_003935945.1	RSEV00000000	SAMN10522863	UBCB 70	Clostridium butyricum
GCA_005116555.1	SWBS00000000	SAMN11370923	UBEF-41	Enterococcus lactis
GCA_016307185.1	JADPYW000000000	SAMN16793265	UBLC-42	Lacticaseibacillus casei
GCA_003640765.1	RCFI00000000	SAMN10147909	UBLPC-35	Lacticaseibacillus paracasei
GCA_004798455.1	SSHM00000000	SAMN11370921	UBLR-58	Lacticaseibacillus rhamnosus
GCA_003692725.1	RDEY00000000	SAMN10239524	UBLP-40	Lactiplantibacillus plantarum
GCA_003641085.1	RBHY00000000	SAMN10136005	UBLA-34	Lactobacillus acidophilus
GCA_019537355.1	JAIEUH000000000	SAMN20447867	UBLCp-01	Lactobacillus crispatus
GCA_008014735.1	VOXB00000000	SAMN12548517	UBLB01	Lactobacillus delbrueckii subsp. bulgaricus
GCA_019459565.1	JAIAZV000000000	SAMN20447908	UBLI-01	Lactobacillus iners
GCA_019459545.1	JAIAZU000000000	SAMN20447906	UBLJe-01	Lactobacillus jensenii
GCA_019459625.1	JAIAZX000000000	SAMN20447913	UBLJ-01	Lactobacillus johnsonii
GCA_019459585.1	JAIAZW000000000	SAMN20447910	UBLG-36	Lactobacillus paragasseri
GCA_015159735.1	JADDMV000000000	SAMN16435603	UBLS-22	Ligilactobacillus salivarius
GCA_015160755.1	JADDMW000000000	SAMN15930389	UBLF-31	Limosilactobacillus fermentum
GCA_003719715.1	RIAU00000000	SAMN10246080	UBLRU-87	Limosilactobacillus reuteri
GCA_015159715.1	JADDMU000000000	SAMN16429995	UBPM-01	Paenibacillus polymyxa
GCA_004803605.1	SSWM00000000	SAMN11381952	UBBM-01	Priestia megaterium
GCA_006227745.1	VDCW00000000	SAMN11479476	UBSS01	Streptococcus salivarius

SRA Data Details

Parameter	Value
Data volume, Gbases	31
Data volume, Mbytes	12226

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