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Accession: PRJNA541552 ID: 541552

Enterococcus faecium and Enterococcus faecalis isolates from beef packing plants and retail meat

Enterococcus faecium and Enterococcus faecalis were isolated from various points in a beef packing plant and from retail meat and sequenced.
AccessionPRJNA541552
Data TypeGenome sequencing and assembly
ScopeMultispecies
Publications
  • Published online: Holman D et al., "Draft Genome Sequences of 43 Enterococcus faecalis and Enterococcus faecium Isolates from a Commercial Beef Processing Plant and Retail Ground Beef", Microbiology Resource Announcements, 2019;8(42)
  • Published online: Holman D et al., "Antimicrobial Resistance in Enterococcus Spp. Isolated from a Beef Processing Plant and Retail Ground Beef", Microbiology Spectrum, 2021;9(3)
SubmissionRegistration date: 7-May-2019
Agriculture and Agri-Food Canada
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)3468
WGS master55
SRA Experiments55
Protein Sequences119428
Other datasets
BioSample55
Assembly55
Assembly details:
Assembly levelNumber of Assemblies
55
55
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_006541115.1ContigVHRL00000000SAMN12082484
H74
GCA_006541095.1ContigVHRO00000000SAMN12082481
H22
GCA_006541085.1ContigVHRD00000000SAMN12082492
R43E
GCA_006541075.1ContigVHSC00000000SAMN12082467
C144
GCA_006541885.1ContigVHQP00000000SAMN12082506
W84
GCA_006541905.1ContigVHRU00000000SAMN12082475
G81
GCA_006541875.1ContigVHQQ00000000SAMN12082505
W19
GCA_006541855.1ContigVHQZ00000000SAMN12082496
R51
GCA_006541785.1ContigVHRA00000000SAMN12082495
R50
GCA_006541795.1ContigVHQY00000000SAMN12082497
R52
GCA_006541805.1ContigVHRN00000000SAMN12082482
H4
GCA_006541775.1ContigVHRE00000000SAMN12082491
R37
GCA_006541755.1ContigVHRS00000000SAMN12082477
H102
GCA_006541705.1ContigVHRF00000000SAMN12082490
R30
GCA_006541715.1ContigVHRC00000000SAMN12082493
R49
GCA_006541655.1ContigVHQX00000000SAMN12082498
R53
GCA_006541595.1ContigVHQV00000000SAMN12082500
R7
GCA_006541445.1ContigVHQT00000000SAMN12082502
W133
GCA_006541545.1ContigVHRG00000000SAMN12082489
R29
GCA_006541525.1ContigVHQW00000000SAMN12082499
R5E
GCA_006541515.1ContigVHQU00000000SAMN12082501
W100
GCA_006541465.1ContigVHRT00000000SAMN12082476
G85
GCA_006541435.1ContigVHQO00000000SAMN12082507
W97
GCA_006541405.1ContigVHRW00000000SAMN12082473
G42
GCA_006541335.1ContigVHRY00000000SAMN12082471
G138E
GCA_006541345.1ContigVHRX00000000SAMN12082472
G149
GCA_006541395.1ContigVHSD00000000SAMN12082466
C138
GCA_006541295.1ContigVHRZ00000000SAMN12082470
G127E
GCA_006541355.1ContigVHRV00000000SAMN12082474
G69E
GCA_006541305.1ContigVHSB00000000SAMN12082468
C146
GCA_006541255.1ContigVHRK00000000SAMN12082485
H96E
GCA_006541265.1ContigVHRP00000000SAMN12082480
H136
GCA_006541225.1ContigVHSA00000000SAMN12082469
G109
GCA_006541215.1ContigVHSE00000000SAMN12082465
C112
GCA_006541155.1ContigVHRI00000000SAMN12082487
R20
GCA_006541185.1ContigVHRM00000000SAMN12082483
H44
GCA_017939185.1ContigJAGLAT000000000SAMN18529538
G133
GCA_017939215.1ContigJAGLBN000000000SAMN18529544
R48
GCA_017939585.1ContigJAGLAP000000000SAMN18529543
R42
GCA_017942585.1ContigJAGLAW000000000SAMN18529535
G90
GCA_017942445.1ContigJAGLAY000000000SAMN18529533
C15
GCA_017942435.1ContigJAGLAS000000000SAMN18529539
G140
GCA_017942425.1ContigJAGLAQ000000000SAMN18529542
R1E
GCA_017942395.1ContigJAGLAX000000000SAMN18529534
C116
GCA_017942385.1ContigJAGLAR000000000SAMN18529540
H11
GCA_017942365.1ContigJAGLAU000000000SAMN18529537
G119
GCA_017942335.1ContigJAGLAV000000000SAMN18529536
G92
GCA_006541175.1ContigVHRR00000000SAMN12082478
H112E
GCA_006541485.1ContigVHQR00000000SAMN12082504
W148
GCA_006541535.1ContigVHRQ00000000SAMN12082479
H134E
GCA_006541615.1ContigVHRJ00000000SAMN12082486
R2
GCA_006541625.1ContigVHQS00000000SAMN12082503
W141
GCA_006541685.1ContigVHRB00000000SAMN12082494
R4E
GCA_006541645.1ContigVHRH00000000SAMN12082488
R26E
GCA_017942505.1ContigJAGMTW000000000SAMN18529541
H53
SRA Data Details
ParameterValue
Data volume, Gbases21
Data volume, Mbytes11699

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