MAG KT_bin-0555 from assembly ERS4649291

Organism: uncultured Methylophilaceae bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Nitrosomonadales; Methylophilaceae; environmental samples

Attributes

collection date	2017-09-18
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Sweden
investigation type	metagenome
isolation source	lake water
project name	microbes in stratified freshwaters
sample name	KT_bin-0555
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T17:03:32Z
ENA-LAST-UPDATE	2020-06-18T09:08:18Z
External Id	SAMEA6955972
INSDC center name	BILS
INSDC first public	2020-06-15T17:03:32Z
INSDC last update	2020-06-18T09:08:18Z
INSDC status	public
Submitter Id	KT_bin-0555
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	65.01
completeness software	checkm
contamination score	3.05
geographic location (latitude)	63.34916666666667
geographic location (longitude)	14.458888888888888
gtdb_taxonomy	d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Methylophilaceae;g__Methylopumilus
metagenomic OTU	anoxic_mOTU_0181
metagenomic source	lake water metagenome
region	Jämtland
sample derived from	ERS4649291
sample owner	Sari Peura
scientific_name	uncultured Methylophilaceae bacterium
sequencing method	NovaSeq
site name	Lomtjärnan
swedish lake code	703480-142137
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioSample