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SAG SB-2103-1053-O15 from sample ERS4600375

Identifiers
BioSample: SAMEA7110369; SRA: ERS4870928
Organism
uncultured Methylococcaceae bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Methylococcales; Methylococcaceae; environmental samples
Attributes
ammonium13.0221187427241
chloride1722.308
collection date2016-03-24
conductivity0.19935
dissolved carbon dioxide767.1
broad-scale environmental contextlentic water body
local-scale environmental contextlake
environmental mediumwater
geographic locationSweden
investigation typemetagenome
isolation sourcefreshwater
methane19.8973
nitrate0.325764576670553
nitrite0
oxygen0.115
phosphate0.005612215888152
project namemicrobes in stratified freshwaters
sample nameSB-2103-1053-O15
sulfate3.901328
temperature2.3
ENA-CHECKLISTERC000024
ENA-FIRST-PUBLIC2020-07-31T17:03:33Z
ENA-LAST-UPDATE2020-07-31T15:59:51Z
External IdSAMEA7110369
INSDC center nameBILS
INSDC first public2020-07-31T17:03:33Z
INSDC last update2020-07-31T15:59:51Z
INSDC statuspublic
Submitter IdSB-2103-1053-O15
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremegahit
binning parametersmin_len:1500,min_bin_size:10000,maxP:93,minS:50
binning softwaremetabat
collection datametagenome
completeness score8.33
completeness softwarecheckm
contamination score0.0
ferric iron31.9
ferrous iron0
fluoride50.416
geographic location (depth)1.35
geographic location (latitude)14.458888888888888
geographic location (longitude)63.34916666666667
gtdb_taxonomyd__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylomonadaceae;g__KS41
iron31.9
metagenomic OTUanoxic_mOTU_0004
metagenomic sourcefreshwater metagenome
regionJämtland
sample derived fromERS4600375
sample ownerSari Peura
scientific_nameuncultured Methylococcaceae bacterium
sequencing methodNovaSeq
site nameLomtjärnan (703480-142137)
taxonomic identity markergtdbtk followed by sourmash-lca, see publication
water environmental packagewater
BioProject
PRJEB38681
Retrieve all samples from this project

Submission
EBI; 2020-08-02
Accession:
SAMEA7110369
ID:
15696396

BioProject SRA Nucleotide

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