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TEDDY OU Gut MAG

Identifiers
BioSample: SAMEA7450062; SRA: ERS5208256
Organism
Dorea sp. AF36-15AT
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea; unclassified Dorea
Attributes
collection datenot provided
broad-scale environmental contexthuman gut
local-scale environmental contexthuman gut
environmental mediumfecal
geographic locationrestricted access
host sexfemale
investigation typemetagenome-assembled genome
isolation sourcehuman gut
project namePRJEB40730
sample nameTEDDY_OU_SUBJ1981675801_MAG109
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2021-01-30T04:09:58Z
ENA-LAST-UPDATE2020-10-15T11:17:36Z
External IdSAMEA7450062
INSDC center namePan Lab at OU
INSDC first public2021-01-30T04:09:58Z
INSDC last update2020-10-15T11:17:36Z
INSDC statuspublic
MAG coverage softwarebowtie2; v2.3.5.1
Submitter IdTEDDY_OU_SUBJ1981675801_MAG109
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters--minContig 2000
binning softwareMetaBAT;2.12.1
completeness score92.14
completeness softwareCheckM;v1.0.13
contamination score1.75
geographic location (latitude)restricted access
geographic location (longitude)restricted access
metagenomic sourcehuman gut metagenome
sample derived fromSAMN09408855,SAMN09409448,SAMN09409609,SAMN09411322,SAMN09412483,SAMN09413211,SAMN09413688,SAMN09413738,SAMN09413806,SAMN09414441,SAMN09415184,SAMN09415782,SAMN09416662,SAMN09417599,SAMN09420534,SAMN09420635
scientific_nameDorea sp. AF36-15AT
sequencing methodIllumina HiSeq 2000
taxonomic classificationGTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1981675801: SRR7566427,SRR7562650,SRR7561358,SRR7560614,SRR7567065,SRR7564366,SRR7569266,SRR7563945,SRR7558878,SRR7566046,SRR7563788,SRR7569334,SRR7561942,SRR7566804,SRR7563265,SRR7559987

Submission
EBI; 2021-02-01
Accession:
SAMEA7450062
ID:
17731554

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