Metagenome-assembled genome: SRR11784292_bin.56_me... - BioSample

Metagenome-assembled genome: SRR11784292_bin.56_metaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA110586690; SRA: ERS12684472

Organism: uncultured Prevotellaceae bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; environmental samples

Attributes

broad-scale environmental context	Sheep digestive system
collection date	not provided
environmental medium	Rumen content
geographic location	China
investigation type	metagenome-assembled genome
isolation source	sheep gut metagenome
project name	Rumen metagenome based on Illumina Hiseq
sample name	SRR11784292_bin.56_metaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-08-09T16:29:47Z
ENA-LAST-UPDATE	2022-08-09T16:29:47Z
External Id	SAMEA110586690
INSDC center name	EMG
INSDC first public	2022-08-09T16:29:47Z
INSDC last update	2022-08-09T16:29:47Z
INSDC status	public
Submitter Id	SRR11784292_bin.56_metaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.3
broker name	EBI-EMG
completeness score	50.86
completeness software	CheckM
contamination score	3.45
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	Rumen
metagenomic source	sheep gut metagenome
sample derived from	SAMN14884651
scientific_name	uncultured Prevotellaceae bacterium
sequencing method	HiSeq X Ten
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__;s__
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11784292 of study SRP261434.

BioProject: PRJEB54624
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Submission: EBI; 2022-08-10

Accession:: SAMEA110586690
ID:: 30233716

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Metagenome-assembled genome: SRR11784292_bin.56_metaWRAP_v1.3_MAG

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