MGBC116924

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Result Filters

Organism: uncultured Ruminococcus sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus; environmental samples

Attributes

broad-scale environmental context	mouse gut
collection date	not provided
environmental medium	Faeces
geographic location	South Korea
investigation type	metagenome-assembled genome
isolation source	feces
project name	Metagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample name	MGBC116924
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-02-03T00:44:07Z
ENA-LAST-UPDATE	2023-02-03T00:44:07Z
External Id	SAMEA112390511
INSDC center name	UNIVERSITY OF CAMBRIDGE
INSDC first public	2023-02-03T00:44:07Z
INSDC last update	2023-02-03T00:44:07Z
INSDC status	public
Submitter Id	MGBC116924
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit_v1.1.1-2-g02102e1
binning parameters	default parameters, kmer: 4
binning software	metaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
completeness score	53.10
completeness software	CheckM
contamination score	0.12
geographic location (latitude)	37.59712
geographic location (longitude)	127.05199
local environmental context	mouse-associated habitat
metagenomic source	mouse gut metagenome
sample derived from	ERR2059932
scientific_name	uncultured Ruminococcus sp.
sequencing method	Illumina
taxonomic identity marker	multi-marker approach