U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Binned metagenome: ERR7167062_bin.21_MetaWRAP_v1.1_bin

Identifiers
BioSample: SAMEA112349485; SRA: ERS14460382
Organism
Merdimmobilis hominis
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Merdimmobilis
Attributes
broad-scale environmental contextChicken digestive system
collection date2019-03-13
environmental mediumCaecum
geographic locationSpain
investigation typemetagenome-assembled genome
isolation sourcechicken gut metagenome
project nameMetagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum samples. Samples selected for this batch were deeply sequenced, and were randomised among trials (feed), age, and breed to overcome batch effect. The samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]).
sample nameERR7167062_bin.21_MetaWRAP_v1.1_bin
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2023-03-22
ENA-LAST-UPDATE2023-03-22
External IdSAMEA112349485
INSDC center aliasUNIVERSITY OF COPENHAGEN
INSDC center nameUNIVERSITY OF COPENHAGEN
INSDC first public2023-03-22T12:23:36Z
INSDC last update2023-03-22T12:23:36Z
INSDC statuspublic
Submitter IdERR7167062_bin.21_MetaWRAP_v1.1_bin
assembly softwarenot provided
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score79.15
completeness softwareCheckM
contamination score0.67
geographic location (latitude)41.170048
geographic location (longitude)1.168491
local environmental contextDigestive tube
metagenomic sourcechicken gut metagenome
sample derived fromSAMEA10455477
scientific_namePhocea massiliensis
sequencing methodDNBSEQ-G400
taxonomic classificationThe taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Phocea;s__Phocea massiliensis
taxonomic identity markermulti-marker approach
Description

This sample represents a binned metagenome assembled from the metagenomic run ERR7167062 of study ERP125074.

Submission
EBI; 2023-03-24
Accession:
SAMEA112349485
ID:
33889023

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center