Fram Strait/West Spitsbergen Shelf water column MA... - BioSample

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Result Filters

Organism: Pseudoalteromonas prydzensis
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas

Attributes

broad-scale environmental context	marine pelagic biome [ENVO:01000023]
collection date	2020-09-21
environmental medium	sea water [ENVO:00002149]
geographic location	Svalbard
isolation source	seawater
project name	FRAM_WSC20 metagenomes
sample name	FRAM_WSC20_S25_BML_bin_129_1
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-05-01
ENA-LAST-UPDATE	2023-05-01
External Id	SAMEA112743557
INSDC center alias	MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC center name	MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC first public	2023-05-01T00:19:34Z
INSDC last update	2023-05-01T00:19:34Z
INSDC status	public
Submitter Id	FRAM_WSC20_S25_BML_bin_129_1
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	Flye v2.9.1
binning parameters	Default settings
binning software	Metabat2 v2.15
completeness score	100
completeness software	CheckM v1.2.0
contamination score	0.6
geographic location (latitude)	78.998513
geographic location (longitude)	8.247126
local environmental context	marine photic zone [ENVO:00000209]
metagenomic source	marine metagenome
sample derived from	ERS14356890,ERR10946524
scientific_name	Pseudoalteromonas prydzensis
taxonomic identity marker	16S rRNA gene and multi-gene marker approach

Description: Manually refined metagenome-assembled genome derived from a water column sample collected in the Fram Strait/West Spitsbergen region, specifically derived from ERS14356890,ERR10946524