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Metagenome-Assembled Genome: ERR9616670_bin.20_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114062011; SRA: ERS16045875
Organism
Sutterella wadsworthensis
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Sutterellaceae; Sutterella
Attributes
broad-scale environmental contextHuman digestive system
collection date2015
environmental mediumfaeces
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcehuman feces metagenome
project nameHuman gut microbiota is believed to be directly or indirectly involved in cardiovascular diseases and hypertension. However, the identification and functional status of the hypertension-related gut microbe(s) have not yet been surveyed in a comprehensive manner. Here we characterized the gut microbiome in hypertension status by comparing fecal samples of 60 patients with primary hypertension and 60 gender-, age-, and body weight-matched healthy controls based on whole-metagenome shotgun sequencing.
sample nameERR9616670_bin.20_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-07-13T16:22:59Z
ENA-LAST-UPDATE2023-07-13T16:22:59Z
External IdSAMEA114062011
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-07-13T16:22:59Z
INSDC last update2023-07-13T16:22:59Z
INSDC statuspublic
Submitter IdERR9616670_bin.20_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score99.34
completeness softwareCheckM
contamination score0.0
geographic location (latitude)39.0
geographic location (longitude)122.0
local environmental contextcolon
metagenomic sourcehuman feces metagenome
sample derived fromSAMEA14093615
scientific_nameSutterella wadsworthensis
sequencing methodIllumina HiSeq 2000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Sutterellaceae;g__Sutterella;s__Sutterella wadsworthensis
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR9616670 of study ERP023883.

BioProject
PRJEB62825
Retrieve all samples from this project

Submission
EBI; 2023-07-17
Accession:
SAMEA114062011
ID:
36478102

BioProject Nucleotide

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