Metagenome-Assembled Genome: SRR19149278_bin.1_Met... - BioSample

Metagenome-Assembled Genome: SRR19149278_bin.1_MetaWRAP_v1.3_MAG

Organism: uncultured Ralstonia sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia; environmental samples

Attributes

broad-scale environmental context	human excretory system
collection date	2018-08
environmental medium	urine
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	urine metagenome
project name	Metagenomes of the bacterial and viral constituents of the lower urinary tract.
sample name	SRR19149278_bin.1_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
Submitter Id	SRR19149278_bin.1_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EBI-EMG
completeness score	99.48
completeness software	CheckM
contamination score	0.46
geographic location (latitude)	41.8582
geographic location (longitude)	-87.836
local environmental context	urethra
metagenomic source	urine metagenome
sample derived from	SAMN28162048
scientific_name	uncultured Ralstonia sp.
sequencing method	NextSeq 2000
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;s__
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR19149278 of study SRP295918.