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Metagenome-Assembled Genome: ERR10083829_bin.3_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114449341; SRA: ERS16435985
Organism
Actinomyces massiliensis
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Actinomyces
Attributes
broad-scale environmental contexthuman digestive system
collection datenot provided
environmental mediumdental plaque
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourceoral metagenome
project nameThis study collected dental plaque samples from two non-industrial populations in Cameroon, the Baka and the Nzime. Two plaque samples were collected per individual, one from anterior teeth and one from posterior teeth.
sample nameERR10083829_bin.3_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
INSDC center nameEMG
Submitter IdERR10083829_bin.3_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEBI-EMG
completeness score87.14
completeness softwareCheckM
contamination score2.29
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextoral cavity
metagenomic sourceoral metagenome
sample derived fromSAMEA8023379
scientific_nameActinomyces massiliensis
sequencing methodNextSeq 500
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;s__Actinomyces massiliensis
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR10083829 of study ERP126455.

BioProject
PRJEB64259
Retrieve all samples from this project

Submission
EBI; 2023-09-29
Accession:
SAMEA114449341
ID:
37604021

BioProject Nucleotide

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