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metabat2_XCR1_HOM_7868_bwa.81 MAG

Identifiers
BioSample: SAMEA115146562; SRA: ERS17877423
Organism
Clostridia bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; unclassified Clostridia
Attributes
broad-scale environmental contextGallus gallus
collection date2021-09-15
environmental mediumCaecal contents
geographic locationUnited Kingdom
isolation sourceCaecal contents from a chicken (Gallus gallus)
project nameMetagenomic characterisation of the caecal microbiota of XCR1 knockout chickens
sample namemetabat2_XCR1_HOM_7868_bwa.81 MAG
ENA first public2024-05-09
ENA-CHECKLISTERC000011
External IdSAMEA115146562
INSDC center nameThe Roslin Institute (University of Edinburgh)
INSDC last update2024-01-26T11:57:51Z
INSDC statuspublic
Submitter Idmetabat2_XCR1_HOM_7868_bwa.81 MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMEGAHIT
binning parametersDefault MetaBAT 2 parameters
binning softwareMetaBAT 2
completeness score90.75
completeness softwareCheckM2
contamination score1.04
geographic location (latitude)55.86
geographic location (longitude)-3.2
local environmental contextGastrointestinal tract microbiota
metagenomic sourcechicken gut metagenome
sample derived fromERS16138932
scientific_nameClostridia bacterium
taxonomic identity markerGTDB-Tk
Description

This sample represents a metagenome assembled genome from the metagenomic sample ERS16138932

BioProject
PRJEB64517 Metagenomic characterisation of the caecal microbiota of XCR1 wild-type and knockout chickens, with and without infectious bronchitis virus vaccination
Retrieve all samples from this project

Submission
EBI; 2024-05-11
Accession:
SAMEA115146562
ID:
41371416

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